PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100153590101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 73aa    MW: 8433.64 Da    PI: 10.0407
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100153590101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.3e-31159159
                                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                                  +dDgy+WrKYG+K+vk+s++pr+Y++C+s gC+vkk+ver++ d ++v++tY+g+Hnh 
  Ote100153590101|100153590101  1 MDDGYKWRKYGKKMVKNSPNPRNYFKCSSGGCNVKKRVERDSLDASYVITTYQGKHNHA 59
                                  69********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182906.54E-26161IPR003657WRKY domain
PROSITE profilePS5081130.01161IPR003657WRKY domain
SMARTSM007741.1E-33160IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-30161IPR003657WRKY domain
PfamPF031062.6E-24258IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MDDGYKWRKY GKKMVKNSPN PRNYFKCSSG GCNVKKRVER DSLDASYVIT TYQGKHNHAS  60
PTCVLYCSRH TIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-231611777Probable WRKY transcription factor 4
2lex_A2e-231611777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027076705.17e-35probable WRKY transcription factor 50 isoform X2
SwissprotQ8VWQ54e-29WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A2G9FW181e-38A0A2G9FW18_9LAMI; Uncharacterized protein
TrEMBLA0A2G9H6L21e-38A0A2G9H6L2_9LAMI; Uncharacterized protein
STRINGXP_008342835.13e-33(Malus domestica)
STRINGXP_009779355.12e-33(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]