PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100153750031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

TALE

Protein Properties

Length: 110aa MW: 13318.4 Da PI: 10.3346

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100153750031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.1	1.7e-09	53	87	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp++ ++ LA+ +gL+++q+ +WF N+R ++ Ote100153750031\|100153750031 53 KWPYPTEVDKISLAETTGLDQKQINNWFINQRKRH 87 679*****************************985 PP
2	ELK	30.8	6.5e-11	7	28	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Llr Y+ +++sLkqEFs Ote100153750031\|100153750031 7 ELKDRLLRLYGDHINSLKQEFS 28 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01188	5.6E-5	7	28	IPR005539	ELK domain
PROSITE profile	PS51213	9.655	7	27	IPR005539	ELK domain
Pfam	PF03789	1.7E-6	7	28	IPR005539	ELK domain
PROSITE profile	PS50071	12.487	27	90	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.41E-19	28	100	IPR009057	Homeodomain-like
SMART	SM00389	4.2E-12	29	94	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.3E-28	32	91	IPR009057	Homeodomain-like
CDD	cd00086	3.67E-10	39	91	No hit	No description
Pfam	PF05920	4.0E-18	47	86	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	65	88	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MKTEDRELKD RLLRLYGDHI NSLKQEFSKK KKKGKLPKDA RQKLLEWWNV HYKWPYPTEV 60 DKISLAETTG LDQKQINNWF INQRKRHWKP SENMHLAMME NLSGHLFIGD

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269\|PubMed:16798887}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269\|PubMed:11311158, ECO:0000269\|PubMed:16798887}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071110.1	3e-58	homeobox protein knotted-1-like 6 isoform X1
Refseq	XP_020554838.1	1e-58	homeobox protein knotted-1-like 6 isoform X2
Swissprot	Q84JS6	1e-50	KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBL	A0A4D9AZR8	7e-59	A0A4D9AZR8_SALSN; Uncharacterized protein
STRING	XP_010248543.1	7e-53	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA753	24	80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006]