PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100153790021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HB-other

Protein Properties

Length: 187aa MW: 21205.1 Da PI: 9.4939

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100153790021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	46.1	8.3e-15	54	89	21	56
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++p++++r eL+k+l+L++rqVk+WFqNrR+++k Ote100153790021\|100153790021 54 ECPHPDEKQRLELSKRLSLETRQVKFWFQNRRTQMK 89 589******************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	8.4E-7	46	95	IPR001356	Homeobox domain
Pfam	PF00046	3.0E-12	54	89	IPR001356	Homeobox domain
CDD	cd00086	4.38E-10	54	91	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-13	54	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.8E-12	54	96	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.07	56	91	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	66	89	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MWGEGGAEMK STRADLGATT WTVHLVMIKK IPTALXXXXX PPTHTAANPR TRIECPHPDE 60 KQRLELSKRL SLETRQVKFW FQNRRTQMKT QLERHENSIL RQENDKLRAE NMSXXXXXXX 120 XRNPICTNCG GTAMIGDVSL EEQHLRIENA RLKEELDRVC TLAGKFLGRP IPALAAAAPV 180 PNSSLEL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015961616.1	8e-70	homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Refseq	XP_016198931.1	9e-70	homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Swissprot	Q0WV12	2e-61	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A022R5Y7	2e-69	A0A022R5Y7_ERYGU; Uncharacterized protein (Fragment)
TrEMBL	A0A061DVH8	7e-69	A0A061DVH8_THECC; HD domain class transcription factor isoform 3 (Fragment)
TrEMBL	A0A1R3I7T7	2e-68	A0A1R3I7T7_COCAP; Uncharacterized protein
TrEMBL	A0A314UHE8	8e-70	A0A314UHE8_PRUYE; Uncharacterized protein
STRING	EOX96069	5e-69	(Theobroma cacao)
STRING	Migut.N01420.1.p	3e-70	(Erythranthe guttata)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]