PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100154470011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 226aa    MW: 25888.2 Da    PI: 10.3486
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100154470011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.2e-10116163455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +h+ +Er RR+ri +++  L++l+P +    +k + Ka +L + ++Y++sLq
  Ote100154470011|100154470011 116 SHSLAERVRRERISERMKLLQTLVPGC----DKVNGKALMLDEIINYVQSLQ 163
                                   8*************************9....5559****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-16110179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.87E-9110167No hitNo description
Gene3DG3DSA:4.10.280.109.9E-16112175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.218112162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-7116163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-9118168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSISPPHLHQ SPHNKIIANS NFNQQTLLHN FVDNDASVVN KKSMDDSSSI VTPLEKKRKS  60
RAASSPQSKD KREGTRKKQK KLKDDEKKKN NSKEESKAEE AGYIHVRARR GQATDSHSLA  120
ERVRRERISE RMKLLQTLVP GCDKVNGKAL MLDEIINYVQ SLQNQVEFLS MKLASTNPMF  180
YDFGSDLESF MVRPGQGSRQ TLWEMDEHRQ KIINQSGFNN SLFSFH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073133.12e-70transcription factor bHLH137
SwissprotQ93W883e-54BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A0H3YB673e-84A0A0H3YB67_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.O00350.1.p7e-68(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]