PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100155150051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 549aa    MW: 61841.3 Da    PI: 9.3736
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100155150051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.8e-33224281260
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                   dDgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers  d++++ei+Y+g+Hnh+k
  Ote100155150051|100155150051 224 DDGYNWRKYGQKQVKGSENPRSYYKCTYSNCSVKKKVERSL-DGQITEIVYKGSHNHPK 281
                                   8****************************************.***************85 PP
2WRKY105.92.1e-33397455159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d++ v++tYeg+Hnh+
  Ote100155150051|100155150051 397 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTPGCPVRKHVERASHDQRSVITTYEGKHNHD 455
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-28218282IPR003657WRKY domain
SuperFamilySSF1182902.75E-25222282IPR003657WRKY domain
SMARTSM007743.6E-36223281IPR003657WRKY domain
PfamPF031068.7E-26224280IPR003657WRKY domain
PROSITE profilePS5081124.019224282IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-37382457IPR003657WRKY domain
SuperFamilySSF1182902.09E-29389457IPR003657WRKY domain
PROSITE profilePS5081138.285392457IPR003657WRKY domain
SMARTSM007748.3E-39397456IPR003657WRKY domain
PfamPF031068.2E-26398455IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MTXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXRGLAD RIAERTGSGV PKFKXXXXXX  60
XXXXXHIPAL RRLAFFLVLY PSRPQPGRAF GFSDSSMSLR RELLRILPSP TTGTFPIQGF  120
GLKNNSDRNQ QQQKDVKAEQ NNFSDFSFQT QKPFTSYDLV GEHRWNYQEP ANQNGPSSDK  180
SSIMKPEANH MQRYSPETAP IKRNDQSAQI DYNQPSQTVN RKSDDGYNWR KYGQKQVKGS  240
ENPRSYYKCT YSNCSVKKKV ERSLDGQITE IVYKGSHNHP KPQSTRRSSS SSSAASASSA  300
VNPSYTARFN ETPDQSYVQD KVDSSVATPD NSTISIGDDE LEHSSQRSRS AGDEIDEDEP  360
DFKRWKGETE SEGVSVGSRA VREPRVVVQT TSDIDILDDG YRWRKYGQKV VKGNPNPRSY  420
YKCTTPGCPV RKHVERASHD QRSVITTYEG KHNHDIPAAR GSGSHSINRP VPAVRPTALP  480
NNSTYPVQTR PPMIESQQAG YGMGMFQSNP ESYGFSGYGN SLSSSYDMAP FSRAKDEPKD  540
DLFLESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-38224458878Probable WRKY transcription factor 4
2lex_A8e-38224458878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027175580.10.0WRKY transcription factor WRKY24-like
SwissprotQ6B6R41e-119WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A0D5YAC00.0A0A0D5YAC0_SALMI; WRKY protein
STRINGVIT_06s0004g07500.t011e-178(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]