PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100155150071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 499aa    MW: 55346.9 Da    PI: 7.5705
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100155150071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.23.4e-33174231260
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                   dDgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers  d++++ei+Y+g+Hnh+k
  Ote100155150071|100155150071 174 DDGYNWRKYGQKQVKGSENPRSYYKCTYSNCSVKKKVERSL-DGQITEIVYKGSHNHPK 231
                                   8****************************************.***************85 PP
2WRKY106.11.8e-33347405159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d++ v++tYeg+Hnh+
  Ote100155150071|100155150071 347 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTPGCPVRKHVERASHDQRSVITTYEGKHNHD 405
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-28168232IPR003657WRKY domain
SuperFamilySSF1182902.35E-25172232IPR003657WRKY domain
SMARTSM007743.6E-36173231IPR003657WRKY domain
PfamPF031067.6E-26174230IPR003657WRKY domain
PROSITE profilePS5081124.019174232IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37332407IPR003657WRKY domain
SuperFamilySSF1182901.83E-29339407IPR003657WRKY domain
PROSITE profilePS5081138.285342407IPR003657WRKY domain
SMARTSM007748.3E-39347406IPR003657WRKY domain
PfamPF031067.2E-26348405IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
LAPVSLNSSX XXXXXXXXXX ISPPSAASPS SWFSIPPGLS PAELLDSPIL LCPSGILPSP  60
TTGTFPIQGF GLKNNSDRNQ QQQKDVKAEQ NNFSDFSFQT QKPFTSYDLV GEHRWNYQEP  120
ANQNGPSSDK SSIMKPEANH MQRYSPETAP IKRNDQSAQI DYNQPSQTVN RKSDDGYNWR  180
KYGQKQVKGS ENPRSYYKCT YSNCSVKKKV ERSLDGQITE IVYKGSHNHP KPQSTRRSSS  240
SSSAASASSA VNPSYTARFN ETPDQSYVQD KVDSSVATPD NSTISIGDDE LEHSSQRSRS  300
AGDEIDEDEP DFKRWKGETE SEGVSVGSRA VREPRVVVQT TSDIDILDDG YRWRKYGQKV  360
VKGNPNPRSY YKCTTPGCPV RKHVERASHD QRSVITTYEG KHNHDIPAAR GSGSHSINRP  420
VPAVRPTALP NNSTYPVQTR PPMIESQQAG YGMGMFQSNP ESYGFSGYGN SLSSSYDMAP  480
FSRAKDEPKD DLFLESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-38174408878Probable WRKY transcription factor 4
2lex_A4e-38174408878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027175580.10.0WRKY transcription factor WRKY24-like
SwissprotQ6B6R41e-127WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A0D5YAC00.0A0A0D5YAC0_SALMI; WRKY protein
STRINGEOY346310.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]