PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100156000021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C2H2

Protein Properties

Length: 250aa MW: 27567.9 Da PI: 5.442

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100156000021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00048	36	58	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+dCg sF+++ L H ++H Ote100156000021\|100156000021 36 HKCSDCGNSFRTHQALGGHRSSH 58 79**************9999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.87E-5	34	62	No hit	No description
PROSITE profile	PS50157	10.949	36	63	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.0E-7	36	59	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	38	58	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
GPLINLAILE KDKEEGEENL PENQDSGDRV NNSDEHKCSD CGNSFRTHQA LGGHRSSHNK 60 TRSTIFNTXX XXXXXXXXXX XXNRRRKSSS STSNNNKEKA STSSSVTFDI DLNLSPKEDE 120 DDVHAGSDAP SSSTNTRIPA EKEDTPITTG IQEEEKVKIA DGSGFILKGW STTDKRGRPA 180 AADEEDEEVL AAAVQLMKMH EDGVMKLQEK EKTMLKIQEK KPAEKKSGGL KCGECGKFVH 240 IPDHLNSEVK