PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100156520211
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 199aa    MW: 23391.8 Da    PI: 9.566
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100156520211genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.93.6e-157461251
                                  HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                   fs+ rngi+KKA+ L  L da+v++i++s++++l+ey s
  Ote100156520211|100156520211  7 EFSNKRNGIFKKAHKLTLLHDAQVSIIMLSTNNQLFEYTS 46
                                  59************************************75 PP
2K-box50.49.5e-1858148191
                         K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                                   yq++ g++ +++++e++ +el++L++ + +++re+ +++G++L++L++++L +Le+++ + l++i ++K +ll e  ++l+
  Ote100156520211|100156520211  58 YQSRVGVNIWSSHYEKMLEELRRLEDVNTTIRREIMKRKGKELDNLNMEQLCKLEEEMLRTLSNIQDRKVKLLEERQKTLR 138
                                   78888999************************************************************************9 PP

                         K-box  82 kkekelqeen 91 
                                   +  ++  e n
  Ote100156520211|100156520211 139 ENLEMEYEYN 148
                                   9877766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.189148IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-4147IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-20481IPR002100Transcription factor, MADS-box
PfamPF003193.3E-10644IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-91025IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-92546IPR002100Transcription factor, MADS-box
PfamPF014861.7E-869147IPR002487Transcription factor, K-box
PROSITE profilePS5129710.29971158IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEMKNMEFSN KRNGIFKKAH KLTLLHDAQV SIIMLSTNNQ LFEYTSPTST TKKIIDQYQS  60
RVGVNIWSSH YEKMLEELRR LEDVNTTIRR EIMKRKGKEL DNLNMEQLCK LEEEMLRTLS  120
NIQDRKVKLL EERQKTLREN LEMEYEYNGR VVDKGSIAGG NLAYPAHPRR RRLQRGXXXX  180
XXXXNSCLTT AAMEVEDSV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D9A7Q23e-43A0A4D9A7Q2_SALSN; Uncharacterized protein