PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100156520231

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

SRS

Protein Properties

Length: 218aa MW: 23315 Da PI: 4.5034

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100156520231	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	99.5	6.4e-31	69	154	68	154
DUF702 68 aeaaskrkrelkskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLy 148 kr+re+ +++++l +t +++++s +e+ ++Peevs+eavfrcvr+++vddge+++aY+tav+i+GhvfkGiLy Ote100156520231\|100156520231 69 XXXXXKRQREN-PTTSTSLVCTPIPTSTSALGVEVGNFPEEVSAEAVFRCVRMNAVDDGEDQYAYHTAVNISGHVFKGILY 148 44556777765.9999*************************************************************** PP DUF702 149 dqGlee 154 dqG+e+ Ote100156520231\|100156520231 149 DQGTEA 154 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.1E-26	66	153	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	2.1E-27	105	151	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MAGFFSLGGG GGRDHHNPSS DINPESWFLY RNDEIPSYRS DAREEHVGSG GQEAGXXXXX 60 XXXXXXXXXX XXXKRQRENP TTSTSLVCTP IPTSTSALGV EVGNFPEEVS AEAVFRCVRM 120 NAVDDGEDQY AYHTAVNISG HVFKGILYDQ GTEAQYMAAE GGESSSGAGV QHHNLITATA 180 DNTAAAGSGP PSPYIDPSLF PAPLSFMAGT QFFTPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090405.1	2e-52	protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	6e-41	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A4D8YTI2	2e-53	A0A4D8YTI2_SALSN; Uncharacterized protein
STRING	XP_009628752.1	7e-45	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA18294	2	4

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]