PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100157150111

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 196aa MW: 22698.3 Da PI: 8.7977

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100157150111	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.1	3.2e-32	121	179	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +prsYYrCt ++C+vkk+ver +ed ++v++tYeg+Hnh+ Ote100157150111\|100157150111 121 LDDGYKWRKYGQKVVKNSLHPRSYYRCTESNCRVKKRVERLSEDCRLVITTYEGRHNHS 179 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.1E-34	106	179	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-28	113	179	IPR003657	WRKY domain
PROSITE profile	PS50811	29.654	116	181	IPR003657	WRKY domain
SMART	SM00774	1.2E-36	121	180	IPR003657	WRKY domain
Pfam	PF03106	6.7E-25	122	178	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MEGERGLVPP IYDHLSISFE DQNLSYLATA PAELHNLQVA TNNNGSLGLN HDHFLNNRPS 60 WNNHQVMALD PKSVNDKNCS GNSKEGGHSW WRNSSVEKVK IRRKLREPRF CFQTRSEVDV 120 LDDGYKWRKY GQKVVKNSLH PRSYYRCTES NCRVKKRVER LSEDCRLVIT TYEGRHNHSP 180 HVDHSNSSPL DCFSSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-27	112	178	8	74	Probable WRKY transcription factor 4
2lex_A	3e-27	112	178	8	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022863267.1	4e-85	probable WRKY transcription factor 12
Swissprot	Q93WY4	8e-59	WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBL	A0A2G9HLG3	7e-85	A0A2G9HLG3_9LAMI; Uncharacterized protein
STRING	XP_009595924.1	8e-82	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7336	20	29

Publications ? help Back to Top
Yu Y, et al. MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering. Plant Sci., 2013. 212: p. 1-9 [PMID:24094048] Yang L, et al. PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa. Sci Rep, 2016. 6: p. 18643 [PMID:26819184] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Han Y, et al. WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis. Plant Mol. Biol., 2019. 99(1-2): p. 149-159 [PMID:30617455]