PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100158560071

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 177aa MW: 20106.7 Da PI: 9.4735

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100158560071	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	93.2	4.4e-29	9	86	52	128
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 a+e+e yfFs+++ ky++g+r nrat+sgyWkatg dk+v+s ++ vglkktLvfy g+ pkg +tdW+mheyrl Ote100158560071\|100158560071 9 GASEQERYFFSTKQVKYPNGNRFNRATASGYWKATGLDKQVVSPrCHQIVGLKKTLVFYIGKPPKGCRTDWIMHEYRL 86 4567899*********************************9867888*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	35.981	1	103	IPR003441	NAC domain
SuperFamily	SSF101941	1.16E-34	10	103	IPR003441	NAC domain
Pfam	PF02365	3.6E-13	15	86	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MVVALAVAGA SEQERYFFST KQVKYPNGNR FNRATASGYW KATGLDKQVV SPRCHQIVGL 60 KKTLVFYIGK PPKGCRTDWI MHEYRLLNNL PQHNWLLCRI FLKRRGNKTH DDDDQPPVFY 120 DVMAKERADL NLAPASSCSG SSGITQISGR NWELDDHEES SSCNSFPSSF TRKRSCN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-29	12	104	70	166	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-29	12	104	70	166	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-29	12	104	70	166	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-29	12	104	70	166	NO APICAL MERISTEM PROTEIN
3swm_A	7e-29	12	104	73	169	NAC domain-containing protein 19
3swm_B	7e-29	12	104	73	169	NAC domain-containing protein 19
3swm_C	7e-29	12	104	73	169	NAC domain-containing protein 19
3swm_D	7e-29	12	104	73	169	NAC domain-containing protein 19
3swp_A	7e-29	12	104	73	169	NAC domain-containing protein 19
3swp_B	7e-29	12	104	73	169	NAC domain-containing protein 19
3swp_C	7e-29	12	104	73	169	NAC domain-containing protein 19
3swp_D	7e-29	12	104	73	169	NAC domain-containing protein 19
4dul_A	6e-29	12	104	70	166	NAC domain-containing protein 19
4dul_B	6e-29	12	104	70	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086848.1	2e-80	NAC domain-containing protein 83
Swissprot	Q9FY93	1e-52	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2G9H1C1	3e-79	A0A2G9H1C1_9LAMI; Uncharacterized protein
STRING	cassava4.1_014491m	2e-66	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1387	23	77

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]