PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100159130031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 198aa    MW: 21272.7 Da    PI: 6.4954
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100159130031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.44.9e-135985127
                                  --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                  +++++C+f+++tG Ck+G+ CkF+H++
  Ote100159130031|100159130031 59 PGQPECQFYMKTGDCKFGAVCKFHHPK 85
                                  5789*********************96 PP
2zf-CCCH39.59.1e-13105131127
                                   --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                   ++++lC f++r+G+Ck+G++CkF H++
  Ote100159130031|100159130031 105 PGEPLCVFYSRYGICKFGPSCKFDHPM 131
                                   589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.2E-65885IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4835886IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-96085IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-66288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-56486IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7104131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821104132IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9106131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6107131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4109129IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
GQLGSVLSSE NQPHSAGSIQ NDGVSPQGDS GNMASEFYSG SVPMGYYAFQ KDNVFPERPG  60
QPECQFYMKT GDCKFGAVCK FHHPKERLIP VPDCLLSPIG LPLRPGEPLC VFYSRYGICK  120
FGPSCKFDHP MGVFAYNTPA SSSTDSTGIH RLLASSSGTV ALNLSQDGLV EAGSTNNRRH  180
SLSEARQKSL GDNNTDSE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551199.11e-111zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF92e-84ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A4D8YTJ61e-112A0A4D8YTJ6_SALSN; Uncharacterized protein
TrEMBLA0A4D8Z5R41e-111A0A4D8Z5R4_SALSN; Uncharacterized protein
STRINGMigut.F01877.1.p1e-109(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439