PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100161560071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 161aa    MW: 18430.3 Da    PI: 5.3212
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100161560071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.5e-3198156159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDg++WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver++edp +v++tYeg Hnh+
  Ote100161560071|100161560071  98 LDDGFKWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDKEDPLYVVTTYEGIHNHQ 156
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-3384158IPR003657WRKY domain
SuperFamilySSF1182902.75E-2891158IPR003657WRKY domain
PROSITE profilePS5081130.7193158IPR003657WRKY domain
SMARTSM007741.4E-3698157IPR003657WRKY domain
PfamPF031069.3E-2599156IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MDTQLMIMDD DHTYPNAERF GSSSSFRPTN EPGFEVSDFF EFGDWVEDDP SFSSPFSSPA  60
SAASYNPQSF GYSPNAGSEK KEMKEKVAFK TKSEVEVLDD GFKWRKYGKK MVKNSPNPRN  120
YYRCSVEGCP VKKRVERDKE DPLYVVTTYE GIHNHQGPHQ L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-2688158777Probable WRKY transcription factor 4
2lex_A5e-2688158777Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100937.11e-62probable WRKY transcription factor 50
TrEMBLA0A0D5Y9A93e-76A0A0D5Y9A9_SALMI; WRKY protein
STRINGMigut.E01579.1.p3e-60(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462