PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100161860071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 230aa    MW: 26290.9 Da    PI: 5.7023
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100161860071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.3e-091581922155
                                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   k +yps++++  LA+++gL+++q+ +WF N+R ++
  Ote100161860071|100161860071 158 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 192
                                   569*****************************885 PP
2ELK41.92e-14112133122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELK qLlrKYsgyLgsLkqEF+
  Ote100161860071|100161860071 112 ELKGQLLRKYSGYLGSLKQEFM 133
                                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012561.5E-262475IPR005541KNOX2
PfamPF037911.7E-212874IPR005541KNOX2
PfamPF037893.4E-11112133IPR005539ELK domain
PROSITE profilePS5121311.174112132IPR005539ELK domain
SMARTSM011882.8E-8112133IPR005539ELK domain
PROSITE profilePS5007112.989132195IPR001356Homeobox domain
SuperFamilySSF466896.42E-20134209IPR009057Homeodomain-like
SMARTSM003897.4E-13134199IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-28137197IPR009057Homeodomain-like
CDDcd000861.64E-12144196No hitNo description
PfamPF059203.3E-17152191IPR008422Homeobox KN domain
PROSITE patternPS000270170193IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
IGAPPEVVAK LEEACASAAV NRHGTSCVGE DPALDQFMEA YCEMLTKYEQ ELSKPFKEAM  60
LFLSRIECQF KALTLSPSTS AACMDAMETN GSSEEDVDVN NSFIDPQAED RELKGQLLRK  120
YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL DWWSRHYKWP YPSESQKLAL AESTGLDQKQ  180
INNWFINQRK RHWKPSEDMQ FVVMDAAHPH YYMDNVLGNP FPMDISPALL
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087318.11e-146homeobox protein knotted-1-like LET6 isoform X2
RefseqXP_027147802.11e-146homeobox protein knotted-1-like LET6
SwissprotO222991e-133LET6_SOLLC; Homeobox protein knotted-1-like LET6
TrEMBLA0A4D8Z0N21e-150A0A4D8Z0N2_SALSN; Uncharacterized protein
STRINGXP_002518420.11e-141(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68352433