PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100162910091
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 277aa    MW: 31755.8 Da    PI: 6.1714
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100162910091genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.6e-32111167258
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                                   dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers +dp++++itYeg H h
  Ote100162910091|100162910091 111 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSIDDPETLIITYEGLHLH 167
                                   8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-30103167IPR003657WRKY domain
PROSITE profilePS5081127.554105170IPR003657WRKY domain
SuperFamilySSF1182903.01E-27107168IPR003657WRKY domain
SMARTSM007743.2E-37110169IPR003657WRKY domain
PfamPF031065.7E-26111167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEELIRLAEE GSADDQQLMR ELFDDASPLF MQPMESKSAD SHIQVHVPTF DDIEFEXXXX  60
XXXLSYVNYG GYMPEAERVL MAERSYESRG NGERDYKYSL RMKNSGAVMA DDGYKWRKYG  120
QKSIKNSPNP RSYYRCTNPR CSAKKQVERS IDDPETLIIT YEGLHLHYTY PFLFLNNHHH  180
LQGPPIKKQR GPISPPKAQY QAQEFSAQTL NRPERVDSSP LKDPTKELIV QQGLLEDVVP  240
LMIRQPTSSY SSSSASQPSS PVSSNSFSWS PNYLGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-211091671371WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094877.12e-81probable WRKY transcription factor 49
SwissprotQ9FHR74e-40WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLA0A0D5YAF93e-88A0A0D5YAF9_SALMI; WRKY protein
STRINGMigut.J00318.1.p1e-72(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120752124