PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100163460051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

G2-like

Protein Properties

Length: 459aa MW: 50957.1 Da PI: 8.64

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100163460051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.6	2.5e-32	320	375	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGG++ AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Ote100163460051\|100163460051 320 KQRRCWSPELHRRFVSALQQLGGAQAATPKQIRELMQVDGLTNDEVKSHLQKYRLH 375 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.359	317	377	IPR017930	Myb domain
SuperFamily	SSF46689	6.09E-18	317	378	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-29	319	378	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-26	320	375	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-7	322	373	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
LFPISDIIIH TQHKHISLTP VKTRPCSTGS SASSIHLPLL SLSKLSGLHI CSQTSRSGNQ 60 MGSLIPPELT LDCSISSNKR WIPKSTGDFL AEVSRMDSVS EKVSKLDDYV NRLQEEMKKI 120 DAFKRELPLC MLLLNDAIAT IRNEIMRCKN SNPGPILEEF IPLKKSSIDE KDERTDDDKE 180 TDIVNRREKM NWMSSVQLWN SDSNSKKIPG FLDKQRKEEA VDRSAIDELF RSGKNRALAK 240 PFSSFKGCSD FPAMAIGKEG RDEFPGAPSL SLRIPEIKNS TEEVFRSGFS SKSSSSRSGS 300 SCGTYSQSSF KAESQQTGRK QRRCWSPELH RRFVSALQQL GGAQAATPKQ IRELMQVDGL 360 TNDEVKSHLQ KYRLHTRRVP PTANASTDIS LWASQEQCGE SSKPTTSNSS SPQGPLHLTG 420 SSRGTSVTAG DSVEEEDDDK SESHSWKSHK QSSERPHGV

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

LFPISDIIIH TQHKHISLTP VKTRPCSTGS SASSIHLPLL SLSKLSGLHI CSQTSRSGNQ  60
MGSLIPPELT LDCSISSNKR WIPKSTGDFL AEVSRMDSVS EKVSKLDDYV NRLQEEMKKI  120
DAFKRELPLC MLLLNDAIAT IRNEIMRCKN SNPGPILEEF IPLKKSSIDE KDERTDDDKE  180
TDIVNRREKM NWMSSVQLWN SDSNSKKIPG FLDKQRKEEA VDRSAIDELF RSGKNRALAK  240
PFSSFKGCSD FPAMAIGKEG RDEFPGAPSL SLRIPEIKNS TEEVFRSGFS SKSSSSRSGS  300
SCGTYSQSSF KAESQQTGRK QRRCWSPELH RRFVSALQQL GGAQAATPKQ IRELMQVDGL  360
TNDEVKSHLQ KYRLHTRRVP PTANASTDIS LWASQEQCGE SSKPTTSNSS SPQGPLHLTG  420
SSRGTSVTAG DSVEEEDDDK SESHSWKSHK QSSERPHGV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-13	320	373	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-13	320	373	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-13	320	373	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-13	320	373	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092742.1	0.0	myb family transcription factor EFM
TrEMBL	A0A4D9BXT9	0.0	A0A4D9BXT9_SALSN; Uncharacterized protein
STRING	XP_009625720.1	1e-128	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4361	24	43