PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100165600061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 171aa    MW: 18862.6 Da    PI: 9.947
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100165600061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.3e-06116138426
                                   ---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                   ++C +f  +  C+ G++C F H+
  Ote100165600061|100165600061 116 KPCIYFNSSRGCRNGASCAFQHD 138
                                   69********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.061112140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5116139IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4116138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6117144IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MHVIGSENAV GTKNVASSSS PGVPSTSAQY IPPKSYRREM VRPPTYAASG SFHPPSRPGS  60
VQPYVPDSPL VTKDINYYKS LIQQHGGERR ETVPQFGHQN DQEPLNNMMM KPKIMKPCIY  120
FNSSRGCRNG ASCAFQHDAT SPQKLXXXXX XXLPEVQGSK RVKLDREISG A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083502.17e-52zinc finger CCCH domain-containing protein 6
SwissprotQ56XU41e-19C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A4D9ABS73e-56A0A4D9ABS7_SALSN; Uncharacterized protein
STRINGMigut.C00819.1.p2e-36(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA514779
Publications ? help Back to Top
  1. Mastrangelo AM, et al.
    Low temperature promotes intron retention in two e-cor genes of durum wheat.
    Planta, 2005. 221(5): p. 705-15
    [PMID:15666155]