PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100166400071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 91aa    MW: 10194.2 Da    PI: 4.8435
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100166400071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49e-10653347
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                                  +W+ +E +++ da + + ++   +W   ar +g g+t +++k ++q++
  Ote100166400071|100166400071  6 SWSVQENKRFEDALAVHDKEtpeRWQNLARAVGGGKTVEDVKCHYQSL 53
                                  7*****************99**************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.2E-6356IPR001005SANT/Myb domain
PROSITE profilePS500906.051554IPR017877Myb-like domain
SuperFamilySSF466896.4E-11561IPR009057Homeodomain-like
PfamPF002491.6E-6653IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MGSSSSWSVQ ENKRFEDALA VHDKETPERW QNLARAVGGG KTVEDVKCHY QSLVEDIELI  60
ESGKVPLPKY KSITKDNTTL NDQQQSEAST Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-27272675RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083676.15e-35protein RADIALIS-like 4
SwissprotQ1A1731e-27RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1S4B6C64e-32A0A1S4B6C6_TOBAC; protein RADIALIS-like 5
STRINGXP_009586717.16e-33(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231