PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100167230032

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

G2-like

Protein Properties

Length: 240aa MW: 27082.7 Da PI: 8.1711

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100167230032	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.1	8.5e-33	23	76	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+av++LGG++kAtPk +l+lm+v gLt++hvkSHLQ+YR+ Ote100167230032\|100167230032 23 PRLRWTPDLHHCFVHAVDRLGGQHKATPKLVLQLMDVRGLTISHVKSHLQMYRS 76 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.924	19	79	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-31	19	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-15	21	79	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.0E-24	23	77	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-8	24	75	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSSNSHAYAR NNGVRQYIRS KVPRLRWTPD LHHCFVHAVD RLGGQHKATP KLVLQLMDVR 60 GLTISHVKSH LQMYRSMKNN VPQQDEENNE VLFLSPTTKR GRVEKMSEEV ECRRRRICGA 120 VTNPYSSNDD YMQSKVGIXX XXXXXXCRVH HIQLNSQNPS ATADALLLQS DFFKVQKDRC 180 KMEQFSGNEE ADDGCELSLC LPLQKSTVSC TTEISEAVSS SSSHQFHGIN LDLSIALCGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-19	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-19	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-19	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-19	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-19	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-19	24	78	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-19	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-19	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-19	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-19	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-19	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-19	24	78	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070508.1	7e-84	putative Myb family transcription factor At1g14600 isoform X1
TrEMBL	A0A2G9H702	4e-76	A0A2G9H702_9LAMI; Uncharacterized protein
STRING	VIT_01s0137g00050.t01	2e-58	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5433	22	38