PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100168280021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

TCP

Protein Properties

Length: 127aa MW: 14783.1 Da PI: 11.4829

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100168280021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	52.2	2.4e-16	72	106	3	37
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqd 37 g+kdrhsk+hT +g+RdRR+Rls+++a++++dLq+ Ote100168280021\|100168280021 72 GGKDRHSKVHTVRGLRDRRIRLSVPTAIQLYDLQE 106 79********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-14	73	107	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	13.336	73	127	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MWRHMVAIAP YLYLFPQHGV TNDEGSNPTM TSRERKLLPK QEDNPNHYRP TPPSRISQYK 60 NPRIARVSRS FGGKDRHSKV HTVRGLRDRR IRLSVPTAIQ LYDLQEKXXX XXXXEQSGRL 120 AAPRHKG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025012338.1	9e-28	transcription factor TCP5 isoform X1
TrEMBL	A0A1Q3C442	6e-25	A0A1Q3C442_CEPFO; TCP domain-containing protein
STRING	XP_006477684.1	1e-25	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99