PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100168600061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 240aa MW: 26560.4 Da PI: 6.041

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100168600061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	1e-12	71	118	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RRd++++ f L +++P + kKl+Ka+ Le A++Y+k Lq Ote100168600061\|100168600061 71 QDHVVAERKRRDNLRQLFISLSKVVPGL-----KKLDKASLLEDAINYLKVLQ 118 56999*********************.....9**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.008	68	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-10	71	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-14	72	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.74E-12	73	121	No hit	No description
SuperFamily	SSF47459	1.96E-15	73	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-11	74	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.0026	163	204	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MEIFEQNFDE IFDFNPILAE IYSNSSSSTS GVSDHGGANP AAAAFDQLRM NDVFGKRERA 60 SPATRTPLQA QDHVVAERKR RDNLRQLFIS LSKVVPGLKK LDKASLLEDA INYLKVLQER 120 VIALEKEETI DNASSSFLTS YSDSSCGLSS AEISVRISDK NVLIKICCKK QMGLMSRIPC 180 EMERMHLSVI DIRIMPFGGA ALDVTILAEM QSGFLGTVKD IVDHLQAVVG QVEGRRDKHP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080799.1	4e-59	transcription factor bHLH18-like isoform X2
Refseq	XP_012854699.1	5e-59	PREDICTED: transcription factor bHLH18-like
Refseq	XP_020550664.1	5e-59	transcription factor bHLH18-like isoform X1
TrEMBL	A0A4D9ARZ2	9e-77	A0A4D9ARZ2_SALSN; Uncharacterized protein
STRING	Migut.C01371.1.p	2e-58	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8864	16	28