PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100168760201
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 576aa    MW: 61583.2 Da    PI: 10.552
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100168760201genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.3e-11212236126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   +kt+lC +fa+ G C +GdrC+FaHg
  Ote100168760201|100168760201 212 FKTKLCENFAK-GSCTFGDRCHFAHG 236
                                   69*********.*************8 PP
2zf-CCCH17.66.9e-06317340225
                                   -S---SGGGGTS--TTTTT-SS-S CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                                   k ++C  f+    C++G++C+F H
  Ote100168760201|100168760201 317 KSKPCTKFFSISGCPFGENCHFLH 340
                                   7789******9************* PP
3zf-CCCH28.42.7e-09380405227
                                   -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                   kt++C+ f   G Ck+Gd+C+FaHg+
  Ote100168760201|100168760201 380 KTKICNKFKSEGGCKFGDKCHFAHGE 405
                                   89**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547917.01E-15112186IPR004088K Homology domain, type 1
SMARTSM003225.2E-13115185IPR004087K Homology domain
PROSITE profilePS5008414.948116180IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.5E-16117184IPR004088K Homology domain, type 1
CDDcd001059.85E-15118180No hitNo description
PfamPF000134.0E-12118182IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.8E-15209242IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-8210241IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-8211237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.596211238IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-9212236IPR000571Zinc finger, CCCH-type
SMARTSM003560.6315342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.69315343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5316341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-7317340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784378406IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-6378405IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-14378408IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-8378408IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7380405IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.8E-12422489IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.2E-13428489IPR004088K Homology domain, type 1
SMARTSM003225.1E-8429499IPR004087K Homology domain
PROSITE profilePS5008412.915430494IPR004088K Homology domain, type 1
CDDcd001055.78E-13432489No hitNo description
PfamPF000131.2E-9432489IPR004088K Homology domain, type 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MDTRKRGRAE FSNGAFKKSK PGTLEIRILS SVYCSTARPG VNDFFLLPSY LSRLQRAANL  60
ATNATSLMGN GSSADPSHHP ITSRPFPGDL GXXXXXXXXX XXXPPIPAAG PSFGASATAK  120
ISVDASLAGA VIGKGGVNSK QICRQTGAKL SIRDHETDPN LRNIELEGSF EQIQQASAMV  180
REVIVNIGSA AGAGKPFGAT GGHGHGASSS NFKTKLCENF AKGSCTFGDR CHFAHGAAEL  240
RKTGETRLSP PLPALLVLQY RGLAMPTSGG RRWTAPFLRW WQTMDSRKRG RAEFSNGGGY  300
KKSKPEMDSL SSGIGSKSKP CTKFFSISGC PFGENCHFLH YVPGGYNAVA QMMNLAPAPT  360
TRTIGAPLNP QNGAAPGAVK TKICNKFKSE GGCKFGDKCH FAHGEWELGR FGGRMEPQPP  420
APAASSFGAT ATAKISVDAS LAGAVIGKGG VNSKQICRQT GAKLSIRDHE TDPNLRNIEL  480
EGSFEQIQQX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXVEDMAQ QVATSRPSSA  540
RTMPKGRARL GRGAISRTVQ LSYGKQARIV VWGSVV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078827.11e-110zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R06e-70C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLB9T5D81e-103B9T5D8_RICCO; Uncharacterized protein
STRINGcassava4.1_013023m1e-105(Manihot esculenta)