PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100168760202
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 614aa    MW: 66427.5 Da    PI: 10.734
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100168760202genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-11250274126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   +kt+lC +fa+ G C +GdrC+FaHg
  Ote100168760202|100168760202 250 FKTKLCENFAK-GSCTFGDRCHFAHG 274
                                   69*********.*************8 PP
2zf-CCCH17.57.4e-06355378225
                                   -S---SGGGGTS--TTTTT-SS-S CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                                   k ++C  f+    C++G++C+F H
  Ote100168760202|100168760202 355 KSKPCTKFFSISGCPFGENCHFLH 378
                                   7789******9************* PP
3zf-CCCH28.33e-09418443227
                                   -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                   kt++C+ f   G Ck+Gd+C+FaHg+
  Ote100168760202|100168760202 418 KTKICNKFKSEGGCKFGDKCHFAHGE 443
                                   89**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547917.74E-15150224IPR004088K Homology domain, type 1
SMARTSM003225.2E-13153223IPR004087K Homology domain
PROSITE profilePS5008414.948154218IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.9E-16155222IPR004088K Homology domain, type 1
CDDcd001051.11E-14156218No hitNo description
PfamPF000134.4E-12156220IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.0E-15247280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-8248279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.596249276IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-8249275IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9250274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.69353381IPR000571Zinc finger, CCCH-type
SMARTSM003560.6353380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5354379IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-7355378IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784416444IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-14416446IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-6416443IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-8416446IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-7418443IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.16E-12460527IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.6E-13466527IPR004088K Homology domain, type 1
SMARTSM003225.1E-8467537IPR004087K Homology domain
PROSITE profilePS5008412.915468532IPR004088K Homology domain, type 1
CDDcd001056.49E-13470527No hitNo description
PfamPF000131.3E-9470527IPR004088K Homology domain, type 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MDLRLNLCIT NICLQHGRLS LRRKLPLPPP RSRRLXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXS RLQRAANLAT NATSLMGNGS SADPSHHPIT  120
SRPFPGDLGX XXXXXXXXXX XPPIPAAGPS FGASATAKIS VDASLAGAVI GKGGVNSKQI  180
CRQTGAKLSI RDHETDPNLR NIELEGSFEQ IQQASAMVRE VIVNIGSAAG AGKPFGATGG  240
HGHGASSSNF KTKLCENFAK GSCTFGDRCH FAHGAAELRK TGETRLSPPL PALLVLQYRG  300
LAMPTSGGRR WTAPFLRWWQ TMDSRKRGRA EFSNGGGYKK SKPEMDSLSS GIGSKSKPCT  360
KFFSISGCPF GENCHFLHYV PGGYNAVAQM MNLAPAPTTR TIGAPLNPQN GAAPGAVKTK  420
ICNKFKSEGG CKFGDKCHFA HGEWELGRFG GRMEPQPPAP AASSFGATAT AKISVDASLA  480
GAVIGKGGVN SKQICRQTGA KLSIRDHETD PNLRNIELEG SFEQIQQXXX XXXXXXXXXX  540
XXXXXXXXXX XXXXXXXXXX XXVEDMAQQV ATSRPSSART MPKGRARLGR GAISRTVQLS  600
YGKQARIVVW GSVV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078827.11e-109zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-69C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLB9T5D81e-102B9T5D8_RICCO; Uncharacterized protein
STRINGcassava4.1_013023m1e-104(Manihot esculenta)