PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100168760221
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 198aa    MW: 22535.1 Da    PI: 5.0282
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100168760221genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding347e-111567348
                                  SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                                   W t+E++ll+ av+++G g W++Ia++++       + +t+ +c+s++++++
  Ote100168760221|100168760221 15 VWGTWEELLLAFAVNRHGAGAWDSIASELQkrtsdpnLCLTAHNCRSKYLDLK 67
                                  7**********************************99999*********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.04867IPR017877Myb-like domain
SuperFamilySSF466896.01E-71074IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-51148IPR009057Homeodomain-like
PfamPF002493.0E-91567IPR001005SANT/Myb domain
CDDcd001670.001091667No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MTKPDGVAPE TNDDVWGTWE ELLLAFAVNR HGAGAWDSIA SELQKRTSDP NLCLTAHNCR  60
SKYLDLKRRF VVKNGDSEGR EDGRYRKSNV EESASLLEEL RKLRVAELRR EVQRYDLNIE  120
SLELKMKKIE EEREKGMGRE RKEADPEAEK RDFQPEAATA AGTKTTAAAE SEKDRLSVVE  180
EVRDDQTGQK IEKAAELK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078831.15e-70DNA ligase 1 isoform X1
TrEMBLA0A4D9C7C97e-81A0A4D9C7C9_SALSN; Uncharacterized protein
STRINGMigut.K00040.1.p2e-53(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136