PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100168810101

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 297aa MW: 34270.2 Da PI: 7.4098

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100168810101	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.2	9.5e-30	123	183	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++ g++fprsYYrCt++ +C+++k+v+r+++dp+v+eitY+g+H ++ Ote100168810101\|100168810101 123 DDGYSWRKYGQKDILGAKFPRSYYRCTYRlveNCWATKQVQRCDDDPTVFEITYKGTHSCN 183 8*************************9999************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.8E-29	119	184	IPR003657	WRKY domain
SuperFamily	SSF118290	5.1E-26	121	184	IPR003657	WRKY domain
SMART	SM00774	2.6E-38	122	184	IPR003657	WRKY domain
Pfam	PF03106	5.3E-27	123	182	IPR003657	WRKY domain
PROSITE profile	PS50811	21.184	123	187	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MENNCKWEYK TLVNELMQGM EKAKQLQFHL RSTSPSPAQD ILLHRILSSY QKALSILNWN 60 GPVQHLPPSA TADSVHGSCT SEELNNNLRD HHEFNTSKKR KMQPTWTEQV RVNPENGLEG 120 PSDDGYSWRK YGQKDILGAK FPRSYYRCTY RLVENCWATK QVQRCDDDPT VFEITYKGTH 180 SCNHLTPEKQ HMAQHQPLLD LKANLTVNAR NLDMPLPPHF SFPSTYQQEH HSSHMFSSQT 240 NYYSPALRNL GGYRNYQYSQ SDIVSTTNSP IGGNMEFPLD TLDFDPNFPF SISGFFR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	3e-19	123	182	9	68	OsWRKY45
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020551475.1	1e-129	probable WRKY transcription factor 53
Swissprot	Q8H0Y8	2e-61	WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBL	A0A4D9A7C6	1e-127	A0A4D9A7C6_SALSN; Uncharacterized protein
STRING	Migut.E01246.1.p	1e-105	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1843	24	67

Publications ? help Back to Top
Duan S, et al. Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana. Plant Sci., 2018. 268: p. 47-53 [PMID:29362083]