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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Ote100171360101 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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| Family | GATA | ||||||||
| Protein Properties | Length: 148aa MW: 16071.8 Da PI: 8.7188 | ||||||||
| Description | GATA family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GATA | 49.7 | 5.1e-16 | 110 | 139 | 1 | 30 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyy 30
C Cg+++TplWR+gpdg+ tLCnaCGl++
Ote100171360101|100171360101 110 CKACGSKTTPLWRKGPDGPQTLCNACGLRH 139
999*************************85 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57716 | 8.55E-13 | 100 | 142 | No hit | No description |
| SMART | SM00401 | 4.4E-6 | 104 | 148 | IPR000679 | Zinc finger, GATA-type |
| PROSITE profile | PS50114 | 13.376 | 104 | 139 | IPR000679 | Zinc finger, GATA-type |
| Gene3D | G3DSA:3.30.50.10 | 1.3E-14 | 108 | 139 | IPR013088 | Zinc finger, NHR/GATA-type |
| CDD | cd00202 | 3.97E-12 | 109 | 145 | No hit | No description |
| Pfam | PF00320 | 1.5E-13 | 110 | 139 | IPR000679 | Zinc finger, GATA-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0008270 | Molecular Function | zinc ion binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 148 aa Download sequence Send to blast |
MDHNKGKGEK KPKIEGDDGE EIDLTLKLGQ SIQYNQNEEA GGSATYRGVR ESSSAHCESS 60 NTMTNWNEYG GSSVAYSTGG YMVYHQGVFN PTVPTMPTRK RPSADTNKAC KACGSKTTPL 120 WRKGPDGPQT LCNACGLRHL RTIKRGGE |
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA16673 | 5 | 5 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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