PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100171830051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 231aa MW: 26933 Da PI: 5.1748

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100171830051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2e-17	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll++++ +G g+W++ a+ g++Rt+k+c++rw++yl Ote100171830051\|100171830051 16 RGPWTFEEDNLLIQYISCHGEGRWNSLAKFAGLKRTGKSCRLRWLNYL 63 89********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.557	11	67	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-22	12	66	IPR009057	Homeodomain-like
SMART	SM00717	5.3E-15	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-16	16	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.34E-23	17	91	IPR009057	Homeodomain-like
CDD	cd00167	1.82E-11	18	63	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.3E-6	67	99	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MSDSISTYEC ESELRRGPWT FEEDNLLIQY ISCHGEGRWN SLAKFAGLKR TGKSCRLRWL 60 NYLKPDIKRG NLTPHEQLLI LELHCKWGNR VQKQARQLKV ESNSKNFLEA IRTFWIPRLV 120 EQMEQNNPST PSVNKSQTTS SNERVNNFVS DLQLNNFPAQ KNQPEIPIED GYYNVGFPAS 180 CYDDVQELER QDVSTSQCHV AGSDWFGDDL GTTFWNSDEL WQFRKWEELG M

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-14	13	115	24	120	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269\|PubMed:19529828}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:19529828}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070788.1	6e-91	transcription factor MYB62
Swissprot	Q9C9G7	2e-59	MYB62_ARATH; Transcription factor MYB62
TrEMBL	A0A059PRJ0	5e-95	A0A059PRJ0_SALMI; MYB-related transcription factor
STRING	XP_009626235.1	4e-73	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]