PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100171840011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WOX

Protein Properties

Length: 264aa MW: 30162.8 Da PI: 9.1675

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100171840011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.9	2.7e-21	88	147	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l+++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Ote100171840011\|100171840011 88 TRWNPTQEQIGILEMLYRSgMRTPNAHQIEQITAQLgkygKIEGKNVFYWFQNHKARERQ 147 7***************99************************************97 PP
2	Wus_type_Homeobox	118.9	2.2e-38	88	149	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+sG+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq Ote100171840011\|100171840011 88 TRWNPTQEQIGILEMLYRSGMRTPNAHQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 149 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-13	81	152	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.43	83	148	IPR001356	Homeobox domain
SMART	SM00389	1.8E-7	85	152	IPR001356	Homeobox domain
CDD	cd00086	2.90E-5	88	149	No hit	No description
Pfam	PF00046	5.8E-19	88	147	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.9E-8	89	147	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0007165	Biological Process	signal transduction
GO:0010067	Biological Process	procambium histogenesis
GO:0051301	Biological Process	cell division
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MGIHAMKVHQ LPRGLIWDHE PPSLTLGCKR FRPLVPKLSD TLSATTTAAT FDLKSFIKPQ 60 SSPTKPGSSD AQKKDHSPQA EAGQAGGTRW NPTQEQIGIL EMLYRSGMRT PNAHQIEQIT 120 AQLGKYGKIE GKNVFYWFQN HKARERQKQK RNNLGLSHSP RTPPPPPPTS SLFLSSSNME 180 QEEEMVEXXX XXXXXRYKRK WGFGECIEEV HKYCTEEEVE GQERTLKLFP LHPEGRDSLR 240 ECXXXXXXXX XXXXXXXXXX LVLL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011069676.2	7e-93	WUSCHEL-related homeobox 4
Swissprot	Q6X7J9	1e-60	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A4D9B9M1	1e-96	A0A4D9B9M1_SALSN; Uncharacterized protein
STRING	cassava4.1_029129m	2e-88	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6186	23	35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]