PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100172420021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family B3
Protein Properties Length: 242aa    MW: 28066.9 Da    PI: 9.6066
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100172420021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B383.81.6e-26127209185
                                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                   f+k+ltpsdv+k++rlv+pk++a ++ g+ ++  +l + d++  +W+++++y+k+s++yv+ +GW++F ++++L+++D+v 
  Ote100172420021|100172420021 127 FQKELTPSDVGKLNRLVIPKRYAVKYFGDANS--ELEFIDRETSVWKFRYCYWKSSQSYVFMRGWQRFLREKKLRANDTVS 205
                                   99************************888544..8********************************************** PP

                                   EEE- CS
                            B3  82 Fkld 85 
                                   F++ 
  Ote100172420021|100172420021 206 FYMY 209
                                   *943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.9961672IPR001471AP2/ERF domain
SMARTSM003801.5E-81675IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-101769IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-91768IPR016177DNA-binding domain
CDDcd000186.14E-141869No hitNo description
Gene3DG3DSA:2.40.330.102.7E-30123224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-26124219IPR015300DNA-binding pseudobarrel domain
CDDcd100176.37E-23126208No hitNo description
PROSITE profilePS5086312.703127225IPR003340B3 DNA binding domain
PfamPF023623.7E-23127210IPR003340B3 DNA binding domain
SMARTSM010195.0E-18127217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MTSTLNADSN CTSPRHLKGV VPLRNGHFGA QIYADRRRIW LGTFKSEACA ATAYDSAAIN  60
LRLSHRNFPS TATSILEPEF QSHFSTDEVI EMIKNGSYRS KFESYLRSQQ SEVKLSSCTH  120
FSCTLLFQKE LTPSDVGKLN RLVIPKRYAV KYFGDANSEL EFIDRETSVW KFRYCYWKSS  180
QSYVFMRGWQ RFLREKKLRA NDTVSFYMYD SPDHSGRRFL IDCQSQLTRG FKLFGVKIDP  240
CI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2712621413108DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022880922.11e-91AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6P51e-72RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A2Z7CBN58e-91A0A2Z7CBN5_9LAMI; Uncharacterized protein
STRINGXP_004296303.17e-80(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339