PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100173810081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 193aa    MW: 21783.8 Da    PI: 9.9138
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100173810081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.1e-0680102123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C+k F r  nL+ H r H
  Ote100173810081|100173810081  80 FVCEICNKGFQRDQNLQLHRRGH 102
                                   89*******************88 PP
2zf-C2H214.40.00011156178123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC++C+k +  +s+ k H +t+
  Ote100173810081|100173810081 156 WKCEKCSKKYAVQSDWKAHSKTC 178
                                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.8E-679102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.91E-779102No hitNo description
PfamPF121712.3E-580102IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01780102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94980102IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM00355230121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.3E-5144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.91E-7151176No hitNo description
SMARTSM00355140156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MMKISAIQEE NMSNLTTSAS NEASVSSTNV NDHGGGEIYP PPYAAEAPPA KKKRSQPGHP  60
DPGSEVIALS PRTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNSKDVRKKV  120
YVCPETTCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCEK CSKKYAVQSD WKAHSKTCGT  180
REYRCDCGTL FSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-23152193344Zinc finger protein JACKDAW
5b3h_F3e-23152193344Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072643.11e-115protein indeterminate-domain 11, partial
SwissprotQ9LRW71e-101IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A4D8Z8S01e-110A0A4D8Z8S0_SALSN; Uncharacterized protein
STRINGXP_009626387.11e-109(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]