PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100173900041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 191aa MW: 21478.4 Da PI: 6.2916

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100173900041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.4	8.9e-42	26	125	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+C+++Cvlapyfp ++p kf +h++FGasn++k+l++l+ee+r da+s +vyeA+ar+rdPvyG++gvi Ote100173900041\|100173900041 26 PCAACKILRRRCVEKCVLAPYFPPHDPLKFTTAHRVFGASNIIKFLQELHEEQRADAVSNMVYEANARLRDPVYGCAGVIC 106 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lq+q+++l+++la++++e Ote100173900041\|100173900041 107 QLQKQVSELQEQLAKARAE 125 *************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.087	25	126	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-41	26	123	IPR004883	Lateral organ boundaries, LOB
Gene3D	G3DSA:1.20.58.60	6.1E-4	77	151	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MDSGGHTINT SSSSSSYPPH SVVISPCAAC KILRRRCVEK CVLAPYFPPH DPLKFTTAHR 60 VFGASNIIKF LQELHEEQRA DAVSNMVYEA NARLRDPVYG CAGVICQLQK QVSELQEQLA 120 KARAEIVNMQ CQHSNLMAVI CMEMAQSTHT MLPHDYQSLD EFSSSPNSYQ SKTSFLEDNN 180 NLELLWEPLW T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-41	25	131	10	116	LOB family transfactor Ramosa2.1
5ly0_B	4e-41	25	131	10	116	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090094.1	4e-93	LOB domain-containing protein 1
Refseq	XP_021279040.1	5e-93	LOB domain-containing protein 1-like
Swissprot	Q9SK08	8e-70	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A2G9GMD1	4e-99	A0A2G9GMD1_9LAMI; Uncharacterized protein
STRING	EOY33105	5e-91	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669