PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100174420001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NF-YB
Protein Properties Length: 152aa    MW: 17151 Da    PI: 5.3653
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100174420001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB150.33.9e-47398297
                         NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84
                                  +e+d++lPianv+rimkk++P  akisk+aket+qec+sefisfvt+easd +++e+rkt+ngdd++wal+tlGf++y++ + 
  Ote100174420001|100174420001  3 EEHDKLLPIANVGRIMKKIIPPSAKISKEAKETLQECASEFISFVTGEASDWSHKENRKTVNGDDICWALSTLGFDNYADVMM 85
                                  689******************************************************************************** PP

                         NF-YB 85 vylkkyrelegek 97
                                   yl++ re+++++
  Ote100174420001|100174420001 86 RYLQRLREFDRQR 98
                                  *********9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.8E-463123IPR009072Histone-fold
SuperFamilySSF471133.88E-366122IPR009072Histone-fold
PfamPF008081.1E-24972IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.0E-153654No hitNo description
PRINTSPR006159.0E-155573No hitNo description
PRINTSPR006159.0E-157492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MSEEHDKLLP IANVGRIMKK IIPPSAKISK EAKETLQECA SEFISFVTGE ASDWSHKENR  60
KTVNGDDICW ALSTLGFDNY ADVMMRYLQR LREFDRQRAI NSNKASSSEE KEEERGLAQE  120
NNDTSSFSSK PSFDFRILER GGSSSSSSAK PY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-36493493NF-YB
4awl_B2e-36493594NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-36493594NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092666.19e-67nuclear transcription factor Y subunit B-4
SwissprotO040279e-50NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A2G9I2G58e-63A0A2G9I2G5_9LAMI; Uncharacterized protein
STRINGMigut.N01993.1.p2e-64(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]