PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100174670031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

G2-like

Protein Properties

Length: 346aa MW: 38058.3 Da PI: 9.208

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100174670031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.2	2.4e-30	195	250	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH++F++a++ LGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Ote100174670031\|100174670031 195 KARRCWSTELHRKFLQALQLLGGSHLATPKQIRELMKVDGLTNDEVKSHLQKYRLH 250 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.37	192	252	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-26	193	253	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.65E-17	193	253	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-26	195	250	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-7	197	248	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MTHNHKMQQR CQDYIHALED ERRKIQVFKR ELPLCLELVT QAIEACKQQL SGTSTTTEYN 60 LNGQSECSEQ TSSEAPILEE FMPLKSSQEQ ESDKSTDIQK DSKTCKKSDW LRSVQLWNQT 120 PDPSSSQDSR KTVAVVEVKR DGSSGAFHPF NKEKSQAETR VSPVNRSVPP ASTSSSVDTG 180 GGNKKAEKEK EAQRKARRCW STELHRKFLQ ALQLLGGSHL ATPKQIRELM KVDGLTNDEV 240 KSHLQKYRLH TRRPSPSIQN NNNNTQTPQF VVVGGIWVPP EYAAMATTAT SGSGEASGAA 300 TSNGIYAPVA TLPPAKQRRS DSEGGVRSHS PATSSSTHTT TASAAH

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MTHNHKMQQR CQDYIHALED ERRKIQVFKR ELPLCLELVT QAIEACKQQL SGTSTTTEYN  60
LNGQSECSEQ TSSEAPILEE FMPLKSSQEQ ESDKSTDIQK DSKTCKKSDW LRSVQLWNQT  120
PDPSSSQDSR KTVAVVEVKR DGSSGAFHPF NKEKSQAETR VSPVNRSVPP ASTSSSVDTG  180
GGNKKAEKEK EAQRKARRCW STELHRKFLQ ALQLLGGSHL ATPKQIRELM KVDGLTNDEV  240
KSHLQKYRLH TRRPSPSIQN NNNNTQTPQF VVVGGIWVPP EYAAMATTAT SGSGEASGAA  300
TSNGIYAPVA TLPPAKQRRS DSEGGVRSHS PATSSSTHTT TASAAH

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070832.1	1e-157	myb family transcription factor EFM
Swissprot	Q9FPE8	1e-101	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A4D9BPT1	1e-160	A0A4D9BPT1_SALSN; Two-component response regulator ARR-B family
STRING	VIT_01s0011g03110.t01	1e-138	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5219	24	38

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]