PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100175090081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 553aa    MW: 59875.4 Da    PI: 9.0392
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100175090081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY24.55.5e-08220236218
                                   --SS-EEEEEEE--TT- CS
                          WRKY   2 dDgynWrKYGqKevkgs 18 
                                   +DgynWrKYGqK vkg+
  Ote100175090081|100175090081 220 EDGYNWRKYGQKLVKGK 236
                                   7**************95 PP
2WRKY35.12.6e-11358380123
                                   ---SS-EEEEEEE--TT-SS-EE CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                                   ldDgy+WrKYGqK+v+g+++pr+
  Ote100175090081|100175090081 358 LDDGYRWRKYGQKVVRGNPNPRA 380
                                   59*******************96 PP
3WRKY55.88.9e-184194572159
                                   -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY  21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ++sYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Ote100175090081|100175090081 419 SKSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 457
                                   68************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-7206236IPR003657WRKY domain
PROSITE profilePS508119.454214235IPR003657WRKY domain
SuperFamilySSF1182904.18E-7216248IPR003657WRKY domain
SMARTSM007740.0021219247IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-34343378IPR003657WRKY domain
SuperFamilySSF1182904.32E-9350379IPR003657WRKY domain
PROSITE profilePS5081131.341353459IPR003657WRKY domain
SMARTSM007741.1E-34358458IPR003657WRKY domain
PfamPF031061.6E-6359379IPR003657WRKY domain
PfamPF031061.0E-12419457IPR003657WRKY domain
SuperFamilySSF1182905.36E-14419459IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-34420459IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MENHXXXXXX XXXXXXHPSD NGPPHVTDGG GSTNGARYRL LSPAKLPISR STCITIPPGL  60
SPTSFLESPV LLSNIKAEPS PTTGSFFKPQ SIHASGGNAV VPLEKSFTSG NTVDENSSSG  120
FEFRFHTGVS STAGLSSVGM SIPVGMNRNG LVPHQDQRFS QCAPPSSLAS QSIAVARQDS  180
SAYDNIDELN QGGQSNTGIQ TSVSEQKDSS SSVSAERTSE DGYNWRKYGQ KLVKGKIVYK  240
GSHDHPKPQS ARRHNPGALL SIQEDKPDRG LPLSCQEDKV STNNMEQSGS PMLSPLQANE  300
EAIDGSGLQY QGIXXXXXXX XPFLKRRKME DGIDITPVVK PIREPRVVVQ TVSEVDILDD  360
GYRWRKYGQK VVRGNPNPRA EQLPLNTGQE LRGVYVMEXX XXXKRRRPVG LSRAVTGRSK  420
SYYKCTNAGC PVRKHVERAS HDPKAVITTY EGKHNHDVPT ARNSSHEFAG TTSYGGGASK  480
MRPQDSSSSI SLDLGVGIGR AGENKSDEGE RGLRYDIVNG GLNLYGNSVE AHNFQTPASN  540
QCAPTLGRIL MGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-29349459877Probable WRKY transcription factor 4
2lex_A1e-29349459877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095503.10.0probable WRKY transcription factor 20
TrEMBLA0A4D9BBE20.0A0A4D9BBE2_SALSN; WRKY transcription factor 33
STRINGMigut.M01679.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344