PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100176570111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 211aa    MW: 24415.8 Da    PI: 9.9538
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100176570111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74e-18558356
                                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                  k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Ote100176570111|100176570111  5 KKRRLNLEQVKALEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 58
                                  4557899**********************************************9 PP
2HD-ZIP_I/II133.29.5e-43495192
                   HD-ZIP_I/II  1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83
                                  ekkrrl+ eqvk+LE+sFe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr++dalk++n++L+++
  Ote100176570111|100176570111  4 EKKRRLNLEQVKALEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFDALKADNDALKSQ 86
                                  69********************************************************************************* PP

                   HD-ZIP_I/II 84 veeLreelk 92
                                  +++L+++l+
  Ote100176570111|100176570111 87 NKKLHTQLM 95
                                  *****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.779160IPR001356Homeobox domain
SMARTSM003894.1E-18364IPR001356Homeobox domain
SuperFamilySSF466891.5E-18569IPR009057Homeodomain-like
PfamPF000462.2E-15558IPR001356Homeobox domain
CDDcd000865.12E-15561No hitNo description
Gene3DG3DSA:1.10.10.601.8E-19767IPR009057Homeodomain-like
PRINTSPR000317.0E-63140IPR000047Helix-turn-helix motif
PROSITE patternPS0002703558IPR017970Homeobox, conserved site
PRINTSPR000317.0E-64056IPR000047Helix-turn-helix motif
PfamPF021838.6E-1760100IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MLGEKKRRLN LEQVKALEKS FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK  60
QLEKDYDVLK RQFDALKADN DALKSQNKKL HTQLMGLKTR ESNGSMAINL NKENEGSWSN  120
GSETSCEVNL KPSSTTDSRL YLNHHPRNKN SXXXXXXXXX XXIFPTAIGP ATTTNLNHHL  180
PVSNECFGDM FGSIEESQEF WPWADQQQNF H
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098601.11e-99homeobox-leucine zipper protein HOX21
SwissprotQ8LC031e-63ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A4D9BTZ82e-96A0A4D9BTZ8_SALSN; Homeobox-leucine zipper protein
STRINGMigut.H00906.1.p9e-91(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]