PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100177150021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

G2-like

Protein Properties

Length: 329aa MW: 36615.3 Da PI: 8.4814

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100177150021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100	1.6e-31	180	235	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH++F++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Ote100177150021\|100177150021 180 KARRCWSPELHRKFLQALQQLGGSHLATPKQIRELMKVDGLTNDEVKSHLQKYRLH 235 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.187	177	237	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-28	178	238	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.33E-18	178	238	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.9E-27	180	235	IPR006447	Myb domain, plants
Pfam	PF00249	5.6E-8	182	233	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MHRCQDYIHA LEDERRKIQV FQRELPLCLE LVTQAIEACK QQLSGSTTEY HLNGQSECSE 60 QTSSDAPVLE EFIPLKCGQE QESKKPTDID RESNNCKKSD WLRSVQLWNQ IPDPPSNEDS 120 TKKLAVVEVK RDGSGGAFHP FKKERSQIEV KRSVPAASTS SSAETGGNKK TDKEKEAQRK 180 ARRCWSPELH RKFLQALQQL GGSHLATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRRPS 240 PSIQXXXXXX XXXXXAPQFV VVGGIWVPPE YAMATSGSGE AATATSNGIY APVAVLPTPL 300 RAKPQHSDSQ SHSPATSSST HTTTASQPY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-14	180	233	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-14	180	233	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-14	180	233	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-14	180	233	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-14	180	233	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-14	180	233	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-14	180	233	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-14	180	233	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-14	180	233	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-14	180	233	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-14	180	233	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-14	180	233	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070832.1	1e-146	myb family transcription factor EFM
Swissprot	Q9FPE8	7e-97	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A4D9BPT1	1e-151	A0A4D9BPT1_SALSN; Two-component response regulator ARR-B family
STRING	VIT_01s0011g03110.t01	1e-134	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5219	24	38

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]