PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100178110111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NF-YB
Protein Properties Length: 246aa    MW: 27957.4 Da    PI: 7.9222
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100178110111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB140.35e-44831572397
                         NF-YB  23 anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                                    n+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plk+yl++yre+eg++
  Ote100178110111|100178110111  83 XNGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKMYLNRYREMEGDT 157
                                   69***********************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.3E-3984169IPR009072Histone-fold
SuperFamilySSF471132.85E-3084168IPR009072Histone-fold
PfamPF008085.8E-1984131IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.8E-2095113No hitNo description
PROSITE patternPS00685098114IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.8E-20114132No hitNo description
PRINTSPR006151.8E-20133151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MKQEGDTWGE ANSKSHKPTF DGGRAVVAGS SREPRRWQPR QRRRSEPXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXNGKIAKD AKETVQECVS EFISFITSEA SDKCQREKRK  120
TINGDDLLWA MATLGFEDYI DPLKMYLNRY REMEGDTKGS VKGADGSAKK DPLQQQLPST  180
QLLHQGSFTQ GMPYGSTQEM QQYIFEFCYA PTSSTYDGPN ARCGLKMGDL QPTQSLDSVR  240
NILQFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A4e-33841522593NF-YB
4awl_B5e-33841522694NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-33841522694NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094723.12e-67nuclear transcription factor Y subunit B-8
STRINGMigut.J00411.1.p1e-65(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356