PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100178270041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 185aa    MW: 20784 Da    PI: 4.4346
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100178270041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-13242446
                                  S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                  +++eE+ l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
  Ote100178270041|100178270041  2 FSQEEEGLILSLHEALGNK-WAQIASQLP-GRTDNEIKNFWNS 42
                                  89*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.557148IPR017930Myb domain
SMARTSM007172.3E-8246IPR001005SANT/Myb domain
SuperFamilySSF466896.79E-13253IPR009057Homeodomain-like
PfamPF002492.0E-12242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-20245IPR009057Homeodomain-like
CDDcd001672.37E-10244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MFSQEEEGLI LSLHEALGNK WAQIASQLPG RTDNEIKNFW NSSLKKKLIK QGIDPITHKP  60
KAGIQVKVEQ DSLDSVCKDH AYDPIFMSEF QESTDHFNGY TCSIYCDQTL PSYGFNSMPK  120
MVETADYSDA YFMNESSSNS SNSTSLNEAK IVAAFSSGMF EFQFQGEEQD FSSNYAMASL  180
SHAFQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101291.12e-40transcription factor MYB86
TrEMBLA0A059PRL43e-57A0A059PRL4_SALMI; MYB-related transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154