PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100180970011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 723aa    MW: 79636.1 Da    PI: 6.5841
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100180970011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.46.9e-2076130256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   +k +++t+ q++eLe++F++n++p++++r eL k+l+L+ +qVk+WFqNrR+++k
  Ote100180970011|100180970011  76 KKYHRHTAFQIQELEAAFKNNPHPDEKARLELGKRLRLEGKQVKFWFQNRRTQMK 130
                                   678899**********************************************999 PP
2START85.31.4e-272824322133
                                   HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT- CS
                         START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWd 73 
                                   +a +a++el+k+a+++ p+W++ss    es+n de+ + f++  +     + +ea ra+ +v  ++  lve l+d+k qW+
  Ote100180970011|100180970011 282 IAMAAMDELMKLAQLDGPVWFRSSegngESLNLDEYSKMFSSCIGvklshFVTEATRATDNVMINSISLVEALMDVK-QWT 361
                                   57799***********************************888779**999**************************.*** PP

                                   TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-T CS
                         START  74 etla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdse 133
                                   e ++     a++l+ is g      g+lqlm++e+q +sp+vp R   fvR+++++g++ w++vd+S+d  
  Ote100180970011|100180970011 362 ELFPwnigGASILDIISHGlagnkdGTLQLMQSEFQIPSPMVPiRQMKFVRFCKKHGEDMWAVVDISIDTL 432
                                   ********************************************************************976 PP
3START35.42.6e-12436478163205
                                   EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                         START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                                   +vtw+eh++++++++h l+r+l++ g+a+ga++w++ lqrqce
  Ote100180970011|100180970011 436 NVTWIEHTEYDESVVHHLYRPLLRFGIAFGAQKWLSNLQRQCE 478
                                   8*****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.11E-1865132IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-1969140IPR009057Homeodomain-like
PROSITE profilePS5007116.35872132IPR001356Homeobox domain
SMARTSM003891.2E-1574136IPR001356Homeobox domain
PfamPF000461.8E-1776130IPR001356Homeobox domain
CDDcd000861.90E-1676132No hitNo description
SuperFamilySSF559612.75E-19272478No hitNo description
PROSITE profilePS5084822.839272482IPR002913START domain
CDDcd088751.65E-83276478No hitNo description
SMARTSM002341.7E-14281479IPR002913START domain
PfamPF018521.2E-21282431IPR002913START domain
PfamPF018525.2E-8436478IPR002913START domain
SuperFamilySSF559615.91E-16500713No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MSSYSKPLLS TSPPSLSLVC ILFSLSRCPK MENLVEMGLI GESYDSGLIA RAREEELESA  60
SGDDEESTHK KGSRGKKYHR HTAFQIQELE AAFKNNPHPD EKARLELGKR LRLEGKQVKF  120
WFQNRRTQMK TQLERHENSV LRQDNDKLRN ENFAMKEAMR NPICENCGSP AILGEVPIEQ  180
HHLMIENARL KDELNRLRHL ATKVFGKSNV VSAPPIMSHS TLDLSVGRNG FGGLNSLDPG  240
IPLGRDFGNR VSNTFSVMSV NAPAMNTMSV SPPLEKSLFL DIAMAAMDEL MKLAQLDGPV  300
WFRSSEGNGE SLNLDEYSKM FSSCIGVKLS HFVTEATRAT DNVMINSISL VEALMDVKQW  360
TELFPWNIGG ASILDIISHG LAGNKDGTLQ LMQSEFQIPS PMVPIRQMKF VRFCKKHGED  420
MWAVVDISID TLLHGNVTWI EHTEYDESVV HHLYRPLLRF GIAFGAQKWL SNLQRQCELF  480
ASIILSPASN VDHSAISPNG KRSIVKLAQR MSRSFCTGVC STVDEWEVVQ DVDNTKLMTW  540
KSMGCSGVPP GVILSASTTV WMPAPPQRLL DFLQNEKTRS HWDVLSQDGP MRAMLRIPKG  600
QDLDNNISVL HASTPSDTNP SSVVILQETC GDAMGSLVVH AAVPSAEMNV VMSGGESSTV  660
PILPSGFAIF PDGGGGSGSL LTIGFQILVS NLPAAQLTME SVDTVKSLIA RTHHGIKAGL  720
DCN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076208.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A4D9BN740.0A0A4D9BN74_SALSN; Homeobox-leucine zipper protein
STRINGMigut.F00362.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]