PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100181100291

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C3H

Protein Properties

Length: 656aa MW: 71546.3 Da PI: 6.1241

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100181100291	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	285	305	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC++Gd C +aHg Ote100181100291\|100181100291 285 PCPEFRK-GTCRRGDMCEYAHG 305 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00204	1.26E-13	12	138	No hit	No description
SuperFamily	SSF48403	8.39E-16	14	139	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.2E-9	55	129	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.6E-16	58	139	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.398	60	140	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.23	60	90	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.674	95	130	IPR002110	Ankyrin repeat
SMART	SM00248	7.2E-4	95	127	IPR002110	Ankyrin repeat
SMART	SM00356	7.3E-6	280	306	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.4E-4	284	307	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.2E-5	285	305	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.31	285	307	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.8E-5	313	343	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	64	315	338	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
MKGMGQLSVE TEDSFSSLLE YAANNDVEAF RRTIELDLSA VDEAGPWYVR KKGSKQISQE 60 ERTPLMVAAT YGSIDVLKLI VALPEVDLNR LCGPDKWTAL HCAVSGGSVN AFATVKLLLS 120 AGANPNIEDA FGRRPVDLIV VPPGIPDTKA SIEDLLVNSY SDGFIGNGDL QVSLNAPNAA 180 SSVLSSSPER DSPCSPSDSM SSLTALKLSD IPANSVSEKR QYPVDPSLPD IRNSIYSTDE 240 FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKYH YSCVPCPEFR KGTCRRGDMC 300 EYAHGVFECW LHPAQYRTRL CKDGTSCARQ VCFFAHTQEE LRPLYVSTGS GVPSPRSAAS 360 AASFMDMATA LSMLPGSPTS HSVMSPPAFN HTLSPTANGM PHSSSAWPQP NIPTLHLPGS 420 NLQSSRLRSS LSARDIPPDL NMLNDFDAQQ MLLNDMASFS QSNPNSSMLN RSGRSKSTLT 480 PSNLEDLFSS EFASSPRFAD QAVPSGVFSP TQKSFVMNQF QQPQSLLSPI NTNIYSPRNV 540 EHHLLQASLG VSSPRMSPRS LETASPLSAR LSGFSQREKQ QQQQMMHSLG SQEPDVTWVQ 600 SLVKESPPEM MDKAAASSSG AAPSGECSKT NSQVDSIDHS VLGTWLEQMQ LDQIVA

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

MKGMGQLSVE TEDSFSSLLE YAANNDVEAF RRTIELDLSA VDEAGPWYVR KKGSKQISQE  60
ERTPLMVAAT YGSIDVLKLI VALPEVDLNR LCGPDKWTAL HCAVSGGSVN AFATVKLLLS  120
AGANPNIEDA FGRRPVDLIV VPPGIPDTKA SIEDLLVNSY SDGFIGNGDL QVSLNAPNAA  180
SSVLSSSPER DSPCSPSDSM SSLTALKLSD IPANSVSEKR QYPVDPSLPD IRNSIYSTDE  240
FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKYH YSCVPCPEFR KGTCRRGDMC  300
EYAHGVFECW LHPAQYRTRL CKDGTSCARQ VCFFAHTQEE LRPLYVSTGS GVPSPRSAAS  360
AASFMDMATA LSMLPGSPTS HSVMSPPAFN HTLSPTANGM PHSSSAWPQP NIPTLHLPGS  420
NLQSSRLRSS LSARDIPPDL NMLNDFDAQQ MLLNDMASFS QSNPNSSMLN RSGRSKSTLT  480
PSNLEDLFSS EFASSPRFAD QAVPSGVFSP TQKSFVMNQF QQPQSLLSPI NTNIYSPRNV  540
EHHLLQASLG VSSPRMSPRS LETASPLSAR LSGFSQREKQ QQQQMMHSLG SQEPDVTWVQ  600
SLVKESPPEM MDKAAASSSG AAPSGECSKT NSQVDSIDHS VLGTWLEQMQ LDQIVA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087691.1	0.0	zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2G9IBP4	0.0	A0A2G9IBP4_9LAMI; CCCH-type Zn-finger protein
STRING	XP_009799603.1	0.0	(Nicotiana sylvestris)
STRING	XP_009599703.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]