PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100181850011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family YABBY
Protein Properties Length: 130aa    MW: 14895.3 Da    PI: 9.0949
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100181850011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY653e-20246549
                         YABBY  5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvn 49
                                  +++eq+Cy+ CnfCn ilavsvP +slf vvtvrCGhCt+l +v 
  Ote100181850011|100181850011  2 DMAEQLCYIPCNFCNIILAVSVPCSSLFDVVTVRCGHCTNLWTVP 46
                                  5689*************************************9875 PP
2YABBY58.13.8e-1873111107143
                         YABBY 107 eevprvpp..virPPekrqrvPsaynrfikeeiqrikas 143
                                     + r+ +  v+rPPekrqrvPsayn+fikeeiqrika+
  Ote100181850011|100181850011  73 SFINRPDQrlVNRPPEKRQRVPSAYNQFIKEEIQRIKAN 111
                                   33444444449**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.2E-20346IPR006780YABBY protein
PfamPF046907.5E-1676111IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MDMAEQLCYI PCNFCNIILA VSVPCSSLFD VVTVRCGHCT NLWTVPSYTS AEYRVDLGSS  60
SRWNPRMQMQ PPSFINRPDQ RLVNRPPEKR QRVPSAYNQF IKEEIQRIKA NXXXXQILAT  120
GKLSALLPKM
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285328.12e-54PREDICTED: axial regulator YABBY 5
SwissprotQ8GW463e-47YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A0X9PYC43e-63A0A0X9PYC4_MENSP; YABBY family protein 5
STRINGVIT_11s0016g05590.t016e-54(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]