PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100182390041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

G2-like

Protein Properties

Length: 297aa MW: 33439.8 Da PI: 10.0998

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100182390041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103	1.8e-32	53	106	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+ekAtPk +l+lm+vkgL+++hvkSHLQ+YR+ Ote100182390041\|100182390041 53 PRLRWTPELHLCFVHAVERLGGEEKATPKLVLQLMNVKGLSIAHVKSHLQMYRS 106 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-31	49	107	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.852	49	109	IPR017930	Myb domain
SuperFamily	SSF46689	8.6E-16	50	107	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-23	53	108	IPR006447	Myb domain, plants
Pfam	PF00249	7.1E-10	54	105	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MENNTKKEIE GEGEENESKA MNENSSSNST VEENNGKKAS SGSVRQYVRS KTPRLRWTPE 60 LHLCFVHAVE RLGGEEKATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKID DPSEVISQQR 120 LLIDAGDRHI YNLSQLPMLQ SFNQLSPVSS LRFRDAFLPS SLINNPHEIN NMYLSRASSK 180 FLENDRINLM NQRFWQTRQT ATNTINHHLA ASKAQETPIF KEGRSTLKRK LNSDVNLDLN 240 LSLKTTTPSK EKKMKTDHQE VDSSLSLSLF STPKENIHGG VRKNPGGMGS GSLDLSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-18	54	108	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-18	54	108	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-18	54	108	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-18	54	108	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-18	54	108	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-18	54	108	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-18	54	108	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-18	54	108	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-18	54	108	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-18	54	108	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-18	54	108	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-18	54	108	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076824.2	2e-95	uncharacterized protein LOC105160975
TrEMBL	A0A4D8ZMY8	5e-98	A0A4D8ZMY8_SALSN; Uncharacterized protein
STRING	cassava4.1_026842m	3e-67	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8573	21	29