PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100182530031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C3H

Protein Properties

Length: 665aa MW: 74268 Da PI: 6.3371

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100182530031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.6e-07	222	241	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 C f+a+ G+C +G++C+F H Ote100182530031\|100182530031 222 VCEFHAK-GWCIRGNSCRFLH 241 5999999.************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.57E-5	217	241	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.197	217	244	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.7E-5	222	241	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010220	Biological Process	positive regulation of vernalization response
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence Send to blast
MTSSAAGASP PKHSTPDVDD EEYEIEYEEI EEXXXXXXXX XXXXXXXXXX XXXXGLVERV 60 GDDKIGEDLN IGSLENPNHD TVKIVELDEQ KDHIQTLTQG VSLLHKDIGD IKTSESSDKE 120 ELYINGRKIS KYNNEKTPSS DRGEVNHAKT SHSVRVVNPT SIVADAPREN VNAMTSVMAE 180 TNQSAVDSVE NTSPRLHAAQ IRLRDPLPST EFDRESKKIR IVCEFHAKGW CIRGNSCRFL 240 HIKKAPDELI TKNEALGREA ASSSTYVPPL RSGKNPKLGS ETDVSVLPKD DTFRGDPSWD 300 HRGNIRHHLY LDNYQYHGTP PVKGSLSARD SAYHGSSSTT SHDDNHGTRV SGFGPTIDEI 360 INKQSNKGPS DTRLSDLPYS KSRQPLPFCS SWNNNAHVPH KFLQSSLQHH AYVATSMEQS 420 TQPASHSESE TLSHSRIFRD EEPAKYEFGF SSIDWQPSAP FCPSHEITRS ILLKESLYNP 480 MPDHTDKKSV KDGLVKFSYS DQGSSIKNVN VRSKSPEDEE KLLNMVFAGD AMKNNILSSS 540 DDDKVKHDKT KDKAVSEVGG SFKIDNTGDD FKGDDHMQID SKAFKYFQSA LIESVKELLK 600 PTWREGILSK DAHKLIVRKA VDKVLSTLQP HQIPSTDESV KLYICSSQPK LAKLVEGYLN 660 IYGKT

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence Send to blast

MTSSAAGASP PKHSTPDVDD EEYEIEYEEI EEXXXXXXXX XXXXXXXXXX XXXXGLVERV  60
GDDKIGEDLN IGSLENPNHD TVKIVELDEQ KDHIQTLTQG VSLLHKDIGD IKTSESSDKE  120
ELYINGRKIS KYNNEKTPSS DRGEVNHAKT SHSVRVVNPT SIVADAPREN VNAMTSVMAE  180
TNQSAVDSVE NTSPRLHAAQ IRLRDPLPST EFDRESKKIR IVCEFHAKGW CIRGNSCRFL  240
HIKKAPDELI TKNEALGREA ASSSTYVPPL RSGKNPKLGS ETDVSVLPKD DTFRGDPSWD  300
HRGNIRHHLY LDNYQYHGTP PVKGSLSARD SAYHGSSSTT SHDDNHGTRV SGFGPTIDEI  360
INKQSNKGPS DTRLSDLPYS KSRQPLPFCS SWNNNAHVPH KFLQSSLQHH AYVATSMEQS  420
TQPASHSESE TLSHSRIFRD EEPAKYEFGF SSIDWQPSAP FCPSHEITRS ILLKESLYNP  480
MPDHTDKKSV KDGLVKFSYS DQGSSIKNVN VRSKSPEDEE KLLNMVFAGD AMKNNILSSS  540
DDDKVKHDKT KDKAVSEVGG SFKIDNTGDD FKGDDHMQID SKAFKYFQSA LIESVKELLK  600
PTWREGILSK DAHKLIVRKA VDKVLSTLQP HQIPSTDESV KLYICSSQPK LAKLVEGYLN  660
IYGKT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A4D8YZD5	7e-98	A0A4D8YZD5_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3004	21	22