PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100182980051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 173aa MW: 20000.4 Da PI: 5.5409

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100182980051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.5	1.8e-34	8	128	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeel+ ++L+++ ++ + i+++++y ++PwdL+ k+ + k+wyf+s+r +nr+t+sg Ote100182980051\|100182980051 8 LPPGFRFHPTDEELLLHFLHRNSTALLPFHPDLIPDLHLYPYDPWDLQGKAMCQGKKWYFYSRR--------TPNRITHSG 80 79****************9988877555589**********977777899**97........579** PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 yW++ g +++++s+ +g++vg kk +fy g+ ++g ktdW+mhey++ Ote100182980051\|100182980051 81 YWQSIGVEEPIYSSrGGQKVGFKKYSAFYIGQPSQGLKTDWIMHEYKV 128 ********9978899*************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-41	5	133	IPR003441	NAC domain
PROSITE profile	PS51005	40.518	8	162	IPR003441	NAC domain
Pfam	PF02365	2.9E-21	9	128	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MGDNNLNLPP GFRFHPTDEE LLLHFLHRNS TALLPFHPDL IPDLHLYPYD PWDLQGKAMC 60 QGKKWYFYSR RTPNRITHSG YWQSIGVEEP IYSSRGGQKV GFKKYSAFYI GQPSQGLKTD 120 WIMHEYKVPI SSSSSGKRDF KLRDNEEDDG TELSCLDEVF LSLDDLDEVS LPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	3e-35	4	136	16	153	NAC domain-containing protein 19
3swm_B	3e-35	4	136	16	153	NAC domain-containing protein 19
3swm_C	3e-35	4	136	16	153	NAC domain-containing protein 19
3swm_D	3e-35	4	136	16	153	NAC domain-containing protein 19
3swp_A	3e-35	4	136	16	153	NAC domain-containing protein 19
3swp_B	3e-35	4	136	16	153	NAC domain-containing protein 19
3swp_C	3e-35	4	136	16	153	NAC domain-containing protein 19
3swp_D	3e-35	4	136	16	153	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092697.1	3e-80	NAC domain-containing protein 104 isoform X1
Refseq	XP_020553092.1	3e-80	NAC domain-containing protein 104 isoform X1
Refseq	XP_020553093.1	3e-80	NAC domain-containing protein 104 isoform X1
Swissprot	Q8GWK6	7e-64	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A4D9BY50	3e-80	A0A4D9BY50_SALSN; Uncharacterized protein
STRING	XP_009762857.1	3e-77	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]