PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100183100041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ZF-HD
Protein Properties Length: 144aa    MW: 16284.7 Da    PI: 9.8306
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100183100041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.32.1e-291264457
                   ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                                  + YkeClkNhAa++Gg ++DGCgEfm+  geegt +alkC+AC+CHRnFHR+  
  Ote100183100041|100183100041 12 LGYKECLKNHAAAIGGCSTDGCGEFMAG-GEEGTLEALKCSACNCHRNFHRKIL 64
                                  67*************************9.999*******************976 PP
2Homeobox19.61.5e-0679135153
                                   TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                      Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                                   +r Rt+f +eq e + ++ e    k ++ +++e ++L +++g++ ++VkvW +N ++
  Ote100183100041|100183100041  79 KRFRTKFDEEQKEKMLRFAEkagwKMQKADEAEVRRLCEEIGVKRKVVKVWMHNNKY 135
                                   789************88777777789****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.4E-261362IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.3E-271462IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.9771463IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-191462IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.606.9E-2968138IPR009057Homeodomain-like
SuperFamilySSF466895.31E-2070137IPR009057Homeodomain-like
PROSITE profilePS500718.50376140IPR001356Homeobox domain
TIGRFAMsTIGR015652.4E-2778135IPR006455Homeodomain, ZF-HD class
CDDcd000864.34E-479135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSRSITIPSQ GLGYKECLKN HAAAIGGCST DGCGEFMAGG EEGTLEALKC SACNCHRNFH  60
RKILMAQQGG GVERREGKKR FRTKFDEEQK EKMLRFAEKA GWKMQKADEA EVRRLCEEIG  120
VKRKVVKVWM HNNKYHFANK TNTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-20791341873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845004.11e-58PREDICTED: zinc-finger homeodomain protein 3-like
SwissprotO647222e-45ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A2G9HR668e-62A0A2G9HR66_9LAMI; Uncharacterized protein
STRINGMigut.H02547.1.p6e-58(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118652023
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]