PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100183810011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 220aa MW: 25393.3 Da PI: 6.2788

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100183810011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144	8.6e-45	4	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknra 77 l pGfrF Pt+eelv++yL +k++g++ ++++vi+ vdiy+++PwdLp+ + e+++w+fFs+r++++a+g r+nr Ote100183810011\|100183810011 4 LLPGFRFYPTEEELVSFYLFHKLRGTRSDIDRVIPVVDIYDYNPWDLPQlggeVCGVESEQWFFFSPRQEREARGGRPNRL 84 579*************************99************656754445788***************** PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 t++gyWkatg+ +v+s++++++g k+t+vfy grap+g kt W m+ey++ Ote100183810011\|100183810011 85 TTEGYWKATGSPGDVYSSQNSVIGRKRTMVFYVGRAPNGAKTIWKMNEYKA 135 ***********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-49	3	158	IPR003441	NAC domain
PROSITE profile	PS51005	49.124	4	158	IPR003441	NAC domain
Pfam	PF02365	1.9E-21	6	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MDDLLPGFRF YPTEEELVSF YLFHKLRGTR SDIDRVIPVV DIYDYNPWDL PQLGGEVCGV 60 ESEQWFFFSP RQEREARGGR PNRLTTEGYW KATGSPGDVY SSQNSVIGRK RTMVFYVGRA 120 PNGAKTIWKM NEYKAALQSL SPNPQLSEEL SLCRIYKKSR SLRAFDRRPA SSQPQQQEYV 180 PAETTTQIPT NVVNTFQSLQ TENDQSCGWD YDHLINSFHN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-36	4	161	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-36	4	161	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-36	4	161	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-36	4	161	17	168	NO APICAL MERISTEM PROTEIN
4dul_A	4e-36	4	161	17	168	NAC domain-containing protein 19
4dul_B	4e-36	4	161	17	168	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020553649.1	5e-88	NAC domain-containing protein 90-like isoform X2
Refseq	XP_022842757.1	6e-88	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	2e-67	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2G9GF45	9e-88	A0A2G9GF45_9LAMI; Uncharacterized protein
STRING	XP_010271606.1	4e-84	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]