PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100183850051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB

Protein Properties

Length: 219aa MW: 24118.5 Da PI: 8.5619

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100183850051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.5	5.5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl Ote100183850051\|100183850051 14 KGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	22.6	2.5e-07	67	97	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg++T++Edel+++++ +lG++ k+++r + Ote100183850051\|100183850051 67 RGNFTEDEDELIIKLHSLLGNK-RKLVSRGID 97 89********************.999999776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.913	9	65	IPR017930	Myb domain
SMART	SM00717	1.9E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-15	14	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.56E-22	15	89	IPR009057	Homeodomain-like
CDD	cd00167	1.52E-11	16	61	No hit	No description
PROSITE profile	PS50090	4.925	62	102	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.3E-9	65	91	IPR009057	Homeodomain-like
SMART	SM00717	36	66	161	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0010224	Biological Process	response to UV-B
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0090379	Biological Process	secondary cell wall biogenesis involved in seed trichome differentiation
GO:1903086	Biological Process	negative regulation of sinapate ester biosynthetic process
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDDRLIAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEDEDELIIK LHSLLGNKRK LVSRGIDPTT HRPINEAVPP APQEASKTIS 120 FSNSSSSPSK METIERCPDL NLDLRISPPS SQQQNQEALK TGISSGSGTL CFTCSLGIQN 180 SKDCSCRDGI MISGGGNISG YDFMGLKPGV LDYRSLEMK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	8e-16	13	88	26	100	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00479	DAP	Transfer from AT4G38620	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092988.1	1e-106	myb-related protein 308-like
Swissprot	P81393	2e-98	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A5A381	1e-112	A5A381_PLESU; Myb transcription factor
STRING	XP_008363293.1	1e-103	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]