PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100183920021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 521aa    MW: 58800.3 Da    PI: 4.668
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100183920021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.27.9e-31942112102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.TEEE---SSBTTTT....... CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.gFkkvkdeekksks....... 74 
                                   Fl+k++++++d++l+ +isw ++g+sfvv+d+ efa+ +Lp+ Fkh+nf+SFvRQLn+Y g   ++++++  ++       
  Ote100183920021|100183920021  94 FLSKTFDLVDDPSLDAMISWGARGDSFVVWDPVEFARVILPRNFKHNNFSSFVRQLNTYvGIDFISHRDAVVAEvdmdiwp 174
                                   9**********************************************************9778888887776667899999 PP

                                   .........XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  75 .........kekiweFkhksFkkgkkellekikrkks 102
                                            +++ weF+++ F +g+++ll++i+r+k 
  Ote100183920021|100183920021 175 vhlsgfhkiDSDKWEFANEGFVRGQRHLLKNIQRRKP 211
                                   88877765449***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.25E-3190209IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.0E-4790209IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-3391209IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.2E-1294117IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-2794209IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-12132144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-12145157IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MDPNDGRSQN XXXXXXXXXA CLSGGEPGTV PNTASYPTQP MAAPFLVPQQ FSPFVSFESF  60
EGQFESKSEP QNEESLFSAP QPLETLYETP IPPFLSKTFD LVDDPSLDAM ISWGARGDSF  120
VVWDPVEFAR VILPRNFKHN NFSSFVRQLN TYVGIDFISH RDAVVAEVDM DIWPVHLSGF  180
HKIDSDKWEF ANEGFVRGQR HLLKNIQRRK PPHSQHVGSS SGSYDEASKA ELEGGIERLR  240
KERILMMQEV VELQQQQRGT LKHMEMVNEK LQSAERRQKQ MVSFLGKIFQ NPTFLTRMQQ  300
MRQQKNITSP RTTRKFVKHQ MHESGTSDFS PKGQVVKYQR EHDNPFTAKQ IPGFPLEDMA  360
NHPFFGTENV PFQVDDTSLN ENAMNELLSV TEQAEPVPTL EISDPISKGK GIAPEYFISF  420
PEELAKEKTG PEFSIPGPQS MGLEEGVWSS GFRSSAGMSS STELWDNVNS YDVPDLGGSS  480
DVWDIGSLQR AGSSGIEKWL DEESPFDEFD KQESKPRDDA S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-219120917120Heat shock factor protein 1
5d5u_B1e-219120926129Heat shock factor protein 1
5d5v_B1e-219120926129Heat shock factor protein 1
5d5v_D1e-219120926129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101504.10.0heat stress transcription factor A-3-like
TrEMBLA0A4D8YP320.0A0A4D8YP32_SALSN; Heat shock transcription factor, other eukaryote
STRINGcassava4.1_028748m1e-147(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87272025