PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100184060001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 129aa    MW: 14567.4 Da    PI: 4.3154
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100184060001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-19147555
                           AP2  5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                  GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a+++a+ +++g
  Ote100184060001|100184060001  1 GVRQRP-WGKWAAEIRDPR----KaARVWLGTFETAEDAARAYDRAAIEFRG 47
                                  9*****.**********94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.683155IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-21156IPR016177DNA-binding domain
PfamPF008473.3E-13147IPR001471AP2/ERF domain
CDDcd000184.83E-20154No hitNo description
Gene3DG3DSA:3.30.730.101.4E-30155IPR001471AP2/ERF domain
SMARTSM003805.8E-35161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
GVRQRPWGKW AAEIRDPRKA ARVWLGTFET AEDAARAYDR AAIEFRGPRA KLNFSFSDYT  60
EGEMSAVEVX XXXXXXXXXX MWEMGSSSNS SNRSDIWDLK IGEDDLQEWM MMMDGDSSDS  120
ANGGNLPSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22156864ATERF1
3gcc_A1e-22156864ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088263.17e-46ethylene-responsive transcription factor ERF109
TrEMBLA0A2G9GYP84e-48A0A2G9GYP8_9LAMI; Uncharacterized protein
STRINGSolyc01g108240.2.15e-42(Solanum lycopersicum)
STRINGXP_009803667.14e-42(Nicotiana sylvestris)
STRINGPGSC0003DMT4000663435e-42(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165