PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100184370101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 843aa    MW: 91981.8 Da    PI: 6.5039
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100184370101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-114671126
                                  --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                                  ++++ C +++rtG C yG++C+F+H+
  Ote100184370101|100184370101 46 PGEPDCIYYLRTGSCGYGNNCRFNHP 71
                                  5789*********************8 PP
2zf-CCCH34.43.6e-1193117327
                                   S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                   ++ C ++++tGtCk+G++Ck++H++
  Ote100184370101|100184370101  93 QPDCGYYLKTGTCKFGSTCKYHHPK 117
                                   789********************96 PP
3zf-CCCH32.51.5e-10137160427
                                   ---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                   ++C+f++rtG C+yG  CkF H++
  Ote100184370101|100184370101 137 KPCPFYMRTGLCRYGHACKFDHPQ 160
                                   58********************97 PP
4zf-CCCH35.22.1e-11258283227
                                   -S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                   ++++Cr+f++ G CkyG+ Ck++H++
  Ote100184370101|100184370101 258 DQPECRYFMEHGSCKYGPECKYHHPR 283
                                   689*********************96 PP
5zf-CCCH32.61.3e-10303328126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   ++++ C++++ +G CkyG++C+F H+
  Ote100184370101|100184370101 303 PGQPVCSYYSLYGLCKYGPTCRFDHP 328
                                   5789*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1644573IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-54572IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-94771IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-55073IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-45170IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-590117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6890118IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-993117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-595118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6132162IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4133160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.075133161IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8137160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5137159IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5256283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.324256284IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-9258283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6259286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-5262284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-5301328IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-7302329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.568302330IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7304328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5135216.327342508IPR013766Thioredoxin domain
Gene3DG3DSA:3.40.30.108.1E-33407505IPR012336Thioredoxin-like fold
CDDcd030018.61E-50410500No hitNo description
PfamPF000855.0E-26410499IPR013766Thioredoxin domain
SuperFamilySSF528333.28E-29410503IPR012336Thioredoxin-like fold
PRINTSPR004213.2E-6419427No hitNo description
PROSITE patternPS001940420438IPR017937Thioredoxin, conserved site
PROSITE profilePS5135211.529520667IPR013766Thioredoxin domain
Gene3DG3DSA:3.40.30.101.4E-31522584IPR012336Thioredoxin-like fold
SuperFamilySSF528333.67E-24529590IPR012336Thioredoxin-like fold
PfamPF000851.2E-15530587IPR013766Thioredoxin domain
PROSITE patternPS001940548566IPR017937Thioredoxin, conserved site
PRINTSPR004213.2E-6555564No hitNo description
Gene3DG3DSA:3.40.30.101.4E-31617676IPR012336Thioredoxin-like fold
SuperFamilySSF528333.67E-24620665IPR012336Thioredoxin-like fold
PfamPF138484.4E-8623790No hitNo description
PRINTSPR004213.2E-6628639No hitNo description
CDDcd029833.86E-59671808No hitNo description
SuperFamilySSF528336.17E-10672794IPR012336Thioredoxin-like fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045454Biological Processcell redox homeostasis
GO:0005783Cellular Componentendoplasmic reticulum
GO:0009505Cellular Componentplant-type cell wall
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MPGNRRFARN GSTSDRVEEA MRRLKVEDSD DNGRMGDELG TYPDRPGEPD CIYYLRTGSC  60
GYGNNCRFNH PSTNAGQVYG VKTSSEHPER AGQPDCGYYL KTGTCKFGST CKYHHPKDRQ  120
TDTMLNMLGL PMRQEAKPCP FYMRTGLCRY GHACKFDHPQ PALAANVLPV VGPVYGSGGS  180
AVVPSSGVSS ASELSAASLS KATYFANPLX XXXHALVSTS ITGMEYIYGV SPLPVTSVLT  240
APVSNGQLSV SYLPERPDQP ECRYFMEHGS CKYGPECKYH HPREKVSQLV STSLGPLGLP  300
LRPGQPVCSY YSLYGLCKYG PTCRFDHPID GYSYAYSLSM PPLASAYSPP APYQTTASLV  360
PVVDASPARL SDWIKKGATA SNKHQDSNTE ELGDSPRRSD SPPHSSKASS EVLNSNGIVL  420
VEFFAPWCGH CKALTPVWEK AAAVLKGVAT VAALDADAHQ SLAQEYGIQG FPTIKVFAPG  480
KPPVDYQGAR DVKPIAEFAL KQVKALLKER LDGKSGGGSS QKSETSASVE LNSRNFDELV  540
LKSKELWIVE FFAPWCGHCK KLAPEWKKAA XXXXXXXXXH VDCDAEKVSH TPLITCDIEM  600
LTYCVHRRAI FFCPLNNQRC QSLMSRYNVQ GFPTILVFGA DKDSPSPYEG ARTASAIESF  660
ALEQLEANAA PPEVTELTSP DVLEEKCGSA AICFVAFLPD ILDSKAEGRN KYLELLLSVA  720
EKFRKSPYRQ DETSLISFLW AASGKQPDLE KHVGVGGYGY PALVALNVKK KAYAPLKSAF  780
ERDSIIEFVK EAGRGGKGTL PLAATPEIVK TEPWDGKDGE LIEEDEFSLE ELMGDDTASK  840
DEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3vww_A2e-314066654115Protein disulfide-isomerase A6
3vww_B2e-314066654115Protein disulfide-isomerase A6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis. {ECO:0000269|PubMed:21278127}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085485.10.0protein disulfide isomerase-like 2-3
SwissprotQ67UF50.0PDI23_ORYSJ; Protein disulfide isomerase-like 2-3
TrEMBLA0A2G9GV230.0A0A2G9GV23_9LAMI; Thioredoxin/protein disulfide isomerase
STRINGPOPTR_0014s15820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA538022
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Houston NL, et al.
    Phylogenetic analyses identify 10 classes of the protein disulfide isomerase family in plants, including single-domain protein disulfide isomerase-related proteins.
    Plant Physiol., 2005. 137(2): p. 762-78
    [PMID:15684019]
  3. d'Aloisio E, et al.
    The Protein Disulfide Isomerase gene family in bread wheat (T. aestivum L.).
    BMC Plant Biol., 2010. 10: p. 101
    [PMID:20525253]
  4. Onda Y, et al.
    Distinct roles of protein disulfide isomerase and P5 sulfhydryl oxidoreductases in multiple pathways for oxidation of structurally diverse storage proteins in rice.
    Plant Cell, 2011. 23(1): p. 210-23
    [PMID:21278127]
  5. Onda Y,Kawagoe Y
    P5-type sulfhydryl oxidoreductase promotes the sorting of proteins to protein body I in rice endosperm cells.
    Plant Signal Behav, 2013. 8(2): p. e23075
    [PMID:23299424]
  6. Onda Y,Kobori Y
    Differential activity of rice protein disulfide isomerase family members for disulfide bond formation and reduction.
    FEBS Open Bio, 2014. 4: p. 730-4
    [PMID:25161881]